Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 0.0e+00 1413.7 785 100.0
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 0.0e+00 1157.9 791 85.2
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 8.2e-202 708.0 798 56.1
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.6e-152 544.3 810 47.8
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 9.5e-150 535.0 793 47.3
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.8e-148 530.8 898 44.1
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 2.3e-148 530.4 867 44.9
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 6.8e-148 528.9 828 46.3
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 2.0e-147 527.3 825 46.3
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 3.7e-146 523.1 606 54.5
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 1.3e-138 498.0 799 45.3
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 2.4e-137 493.8 806 46.3
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 7.0e-137 492.3 793 45.5
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 6.2e-133 479.2 785 44.5
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 1.3e-130 471.5 786 44.7
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 1.6e-125 454.5 794 43.8
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 1.8e-124 451.1 808 42.3
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 3.1e-124 450.3 800 42.2
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 4.4e-123 446.4 836 41.7
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 8.4e-122 442.2 797 43.0
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.9e-121 441.0 590 49.5
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 3.2e-121 440.3 794 44.1
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.2e-120 438.3 793 44.6
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 1.2e-120 438.3 793 44.9
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 1.6e-117 427.9 869 41.5
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 2.8e-117 427.2 839 40.9
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 3.1e-116 423.7 617 48.1
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 6.9e-116 422.5 805 40.9
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 2.6e-115 420.6 618 48.2
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 3.4e-115 420.2 774 42.8
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 7.6e-115 419.1 675 44.3
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 2.2e-114 417.5 593 45.9
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 2.2e-114 417.5 676 45.3
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 6.4e-114 416.0 625 45.0
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 2.1e-112 411.0 609 45.0
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 4.6e-112 409.8 584 46.2
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 5.1e-111 406.4 622 46.6
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 2.1e-109 401.0 586 49.3
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 2.1e-109 401.0 800 40.6
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.5e-107 394.8 793 39.1
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 4.5e-107 393.3 802 41.3
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 5.8e-107 392.9 799 42.3
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 9.9e-107 392.1 793 39.7
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 1.3e-106 391.7 833 40.8
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 2.2e-106 391.0 794 39.0
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 3.8e-106 390.2 781 38.3
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 4.9e-106 389.8 832 38.9
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 4.9e-106 389.8 784 38.9
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 6.4e-106 389.4 665 43.0
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 2.4e-105 387.5 591 46.7
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 7.1e-105 386.0 767 39.4
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 9.3e-105 385.6 839 38.7
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 1.6e-104 384.8 837 39.1
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 1.0e-103 382.1 830 40.2
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 5.6e-102 376.3 812 38.8
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 2.1e-101 374.4 605 45.8
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.8e-100 371.3 790 40.5
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 1.8e-100 371.3 787 39.5
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 8.4e-98 362.5 623 42.5
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.4e-97 361.7 794 37.7
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 3.2e-97 360.5 572 45.8
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 2.5e-94 350.9 810 37.8
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 2.1e-93 347.8 794 37.3
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 6.9e-92 342.8 804 41.3
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 6.9e-92 342.8 630 41.1
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 9.0e-92 342.4 595 43.4
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.2e-91 342.0 580 45.9
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 1.2e-91 342.0 503 48.9
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 5.8e-91 339.7 840 39.8
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.3e-90 338.6 637 41.8
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 6.5e-90 336.3 641 42.3
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 3.5e-88 330.5 614 41.5
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 4.6e-88 330.1 629 41.2
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 3.1e-84 317.4 467 46.0
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 2.5e-81 307.8 296 62.8
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 3.6e-80 303.9 737 38.8
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 2.4e-76 291.2 582 40.0
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 3.2e-73 280.8 573 40.3
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 3.2e-73 280.8 573 40.3
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 5.5e-73 280.0 663 38.0
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 3.3e-70 270.8 696 35.1
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 9.7e-70 269.2 637 38.3
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 1.3e-69 268.9 640 37.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 4.8e-69 266.9 478 41.6
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.8e-68 265.0 845 34.9
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 6.5e-66 256.5 594 38.6
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 7.2e-65 253.1 653 37.1
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 2.7e-64 251.1 640 37.2
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 2.7e-64 251.1 640 37.2
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 4.7e-64 250.4 812 35.7
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 4.7e-64 250.4 867 31.6
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 7.4e-62 243.0 853 32.2
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 1.3e-61 242.3 496 40.1
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 4.8e-61 240.4 821 33.7
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 5.3e-60 236.9 597 35.5
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 3.5e-59 234.2 652 36.5
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 4.5e-59 233.8 613 36.4
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 5.2e-55 220.3 601 34.4
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 2.0e-54 218.4 798 31.3
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 2.2e-53 214.9 341 44.6
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 9.1e-52 209.5 604 35.4
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.0e-47 196.1 550 37.3
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 4.0e-47 194.1 753 29.1
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 6.8e-47 193.4 662 33.1
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 8.3e-45 186.4 740 28.9
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 9.2e-36 156.4 209 48.8
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.9e-29 134.8 536 31.0
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 8.3e-29 133.3 586 29.2
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 1.5e-25 122.5 411 34.3
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 1.4e-23 115.9 502 30.3
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.1e-23 114.8 619 27.0
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.1e-23 114.8 619 27.0
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.6e-16 92.4 152 43.4
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 9.9e-14 83.2 185 36.2
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 4.0e-07 61.2 191 34.0
Nn1g08524 Nelumbo nucifera HOM05D000558 ORTHO05D003119 7.6e-06 57.0 42 64.3


User provided reference genes

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