Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 2.6e-197 691.8 336 100.0
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 5.2e-190 667.5 336 97.0
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 7.1e-163 577.4 335 81.8
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 1.1e-158 563.5 333 80.8
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 3.5e-154 548.5 334 79.0
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 7.9e-154 547.4 332 79.5
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 1.3e-153 546.6 333 79.9
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 1.8e-153 546.2 334 79.0
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 2.3e-153 545.8 334 79.0
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 2.3e-153 545.8 334 79.0
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 9.7e-152 540.4 326 79.8
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 8.2e-151 537.3 334 77.2
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 5.3e-150 534.6 332 77.1
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 2.0e-149 532.7 334 77.2
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 2.6e-149 532.3 334 78.1
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 4.5e-149 531.6 334 77.2
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 7.7e-149 530.8 334 75.7
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 7.7e-149 530.8 332 76.8
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 7.7e-149 530.8 331 78.2
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 1.0e-148 530.4 334 76.0
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 1.0e-148 530.4 336 74.4
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.7e-148 529.6 334 76.0
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 5.0e-148 528.1 333 78.1
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 5.0e-148 528.1 334 75.7
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 7.2e-147 524.2 336 75.9
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 7.9e-146 520.8 337 74.2
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 5.1e-145 518.1 333 76.3
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 1.5e-144 516.5 334 74.0
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 2.0e-144 516.2 335 74.0
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 4.3e-144 515.0 332 76.2
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 5.7e-144 514.6 337 74.5
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 3.7e-143 511.9 334 74.0
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 8.2e-143 510.8 328 74.7
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 8.2e-143 510.8 332 73.8
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 1.4e-142 510.0 334 73.4
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 2.4e-142 509.2 334 74.0
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 3.1e-142 508.8 338 71.6
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 1.2e-141 506.9 334 72.5
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 1.5e-141 506.5 333 72.4
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 7.7e-141 504.2 329 73.6
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 1.0e-140 503.8 332 73.5
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 2.9e-140 502.3 335 75.2
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 3.8e-140 501.9 325 73.8
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 5.0e-140 501.5 325 73.8
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 6.5e-140 501.1 335 71.6
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 1.1e-139 500.4 335 70.7
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 1.4e-139 500.0 328 73.2
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 5.5e-139 498.0 336 71.1
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 9.4e-139 497.3 334 72.5
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 2.1e-138 496.1 334 72.5
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 7.4e-136 487.6 322 72.4
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 1.3e-135 486.9 334 71.0
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 6.3e-135 484.6 331 70.7
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 1.4e-134 483.4 334 71.6
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 4.1e-134 481.9 334 70.7
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 7.0e-134 481.1 336 69.0
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 2.6e-133 479.2 331 70.4
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 3.5e-133 478.8 324 72.2
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 7.7e-133 477.6 331 70.1
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 1.0e-132 477.2 318 73.3
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 2.9e-132 475.7 331 70.1
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 6.5e-132 474.6 332 72.6
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 8.5e-132 474.2 320 71.9
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 1.9e-131 473.0 333 66.7
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 2.5e-131 472.6 330 69.4
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 3.2e-131 472.2 320 71.6
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 4.2e-131 471.9 333 70.9
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 9.4e-131 470.7 316 71.2
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.6e-130 469.9 331 70.1
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 2.7e-130 469.2 331 70.4
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 6.1e-130 468.0 309 73.1
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 1.8e-129 466.5 319 70.8
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 70.9
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 70.9
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 70.9
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 70.9
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 70.9
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 3.0e-129 465.7 316 71.2
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 4.4e-128 461.8 316 70.6
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 4.8e-127 458.4 333 66.4
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 1.8e-126 456.4 309 71.5
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 1.2e-122 443.7 320 66.2
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 1.0e-121 440.7 333 64.3
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.2e-120 437.2 332 65.7
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 4.4e-120 435.3 327 64.8
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 1.3e-119 433.7 333 64.9
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 1.0e-116 424.1 319 63.9
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 8.0e-114 414.5 335 63.3
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.8e-113 413.3 331 64.7
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 3.4e-104 382.5 303 60.7
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 7.0e-102 374.8 308 58.1
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 2.3e-100 369.8 323 57.9
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 8.9e-97 357.8 291 62.5
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 4.1e-94 349.0 206 80.1
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 6.4e-87 325.1 307 53.7
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 6.4e-87 325.1 203 75.4
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 3.9e-84 315.8 306 53.3
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 5.6e-83 312.0 305 52.1
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 1.5e-80 303.9 258 59.7
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 1.3e-79 300.8 214 68.7
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 4.7e-74 282.3 160 82.5
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 6.6e-68 261.9 177 67.8
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 1.1e-67 261.2 190 65.8
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 6.9e-65 251.9 133 86.5
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 8.4e-63 245.0 162 69.8
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 2.5e-59 233.4 157 71.3
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 5.8e-56 222.2 283 45.6
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.6e-53 214.2 256 50.4
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 6.5e-47 192.2 150 64.0
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 5.5e-46 189.1 130 73.8
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 2.5e-43 180.3 89 89.9
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 7.4e-43 178.7 144 64.6
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 6.5e-31 139.0 124 58.9
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 7.9e-29 132.1 107 57.9
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 7.2e-22 109.0 72 72.2
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 1.8e-20 104.4 216 38.0
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 1.6e-13 81.3 129 39.5
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 2.1e-13 80.9 69 58.0
Cre17.g737650 Chlamydomonas reinhardtii HOM05D038115 ORTHO05D008132 6.3e-10 69.3 148 33.1
Cre16.g655900 Chlamydomonas reinhardtii HOM05D006598 ORTHO05D008132 8.5e-07 58.9 210 28.1
Cre16.g677600 Chlamydomonas reinhardtii HOM05D006598 ORTHO05D008132 8.5e-07 58.9 168 29.8
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 1.1e-06 58.5 206 26.7
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 1.9e-06 57.8 204 26.5
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 1.9e-06 57.8 194 27.3
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 9.4e-06 55.5 183 28.4


User provided reference genes

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