Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 4.8e-97 357.8 182 100.0
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 4.8e-89 331.3 182 91.8
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 1.6e-71 273.1 182 75.8
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 1.5e-69 266.5 183 73.2
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 4.2e-69 265.0 184 71.7
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 4.2e-69 265.0 182 73.6
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 9.4e-69 263.8 182 75.8
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 1.2e-68 263.5 185 74.6
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 1.6e-68 263.1 183 73.2
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 8.0e-68 260.8 182 71.4
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.0e-67 260.4 182 73.1
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.8e-67 259.6 182 72.5
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 3.0e-67 258.8 182 72.5
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 4.0e-67 258.5 182 73.6
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 8.8e-67 257.3 183 73.8
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 3.4e-66 255.4 182 71.4
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 3.4e-66 255.4 184 73.9
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 4.4e-66 255.0 183 72.7
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 7.5e-66 254.2 182 71.4
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 9.8e-66 253.8 182 74.2
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 2.2e-65 252.7 183 71.6
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 3.7e-65 251.9 182 70.9
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 6.3e-65 251.1 182 68.7
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 8.3e-65 250.8 182 70.3
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 1.8e-64 249.6 182 71.4
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 1.8e-64 249.6 182 73.1
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.4e-64 249.2 182 72.5
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 2.4e-64 249.2 182 72.5
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 3.1e-64 248.8 182 70.3
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 4.1e-64 248.4 182 70.9
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 5.4e-64 248.1 182 72.5
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 5.4e-64 248.1 182 72.5
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 7.0e-64 247.7 182 69.8
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 7.0e-64 247.7 182 69.8
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 7.0e-64 247.7 184 69.6
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 1.6e-63 246.5 166 75.3
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 1.6e-63 246.5 182 69.8
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 1.6e-63 246.5 182 70.3
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 2.0e-63 246.1 182 71.4
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.0e-63 246.1 181 70.7
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.7e-63 245.7 181 70.7
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 2.7e-63 245.7 182 70.3
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 4.5e-63 245.0 182 70.3
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 4.5e-63 245.0 182 70.3
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 7.7e-63 244.2 182 71.4
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 1.3e-62 243.4 185 70.3
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.3e-62 243.4 184 69.6
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 1.7e-62 243.0 186 68.3
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 6.6e-62 241.1 185 71.4
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 8.6e-62 240.7 185 66.5
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 1.1e-61 240.4 182 66.5
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.9e-61 239.6 182 69.8
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 4.3e-61 238.4 182 68.1
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 5.6e-61 238.0 183 68.9
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 7.3e-61 237.7 182 67.6
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 9.5e-61 237.3 182 68.7
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 9.5e-61 237.3 188 71.8
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 1.2e-60 236.9 185 69.2
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 1.6e-60 236.5 184 65.2
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 8.0e-60 234.2 186 67.2
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 1.4e-59 233.4 182 67.0
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 1.8e-59 233.0 153 76.5
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 1.8e-59 233.0 181 68.0
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 2.3e-59 232.6 171 69.0
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 3.0e-59 232.3 182 67.0
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 3.0e-59 232.3 182 67.0
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 3.0e-59 232.3 183 66.7
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 1.5e-58 229.9 145 78.6
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 2.0e-58 229.6 181 65.2
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 4.4e-58 228.4 183 66.1
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 5.7e-58 228.0 151 76.2
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 3.7e-57 225.3 155 72.9
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 4.1e-56 221.9 181 63.0
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 9.2e-56 220.7 184 65.2
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 2.0e-55 219.5 183 65.6
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 2.0e-55 219.5 144 75.0
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 2.7e-55 219.2 183 63.4
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 7.8e-55 217.6 181 63.0
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.0e-54 217.2 183 64.5
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 3.0e-54 215.7 154 71.4
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 3.0e-54 215.7 182 63.2
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 5.0e-54 214.9 116 89.7
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 5.0e-54 214.9 152 68.4
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 6.6e-54 214.5 116 89.7
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 6.6e-54 214.5 174 64.4
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 8.6e-54 214.2 187 61.5
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 8.6e-54 214.2 181 61.9
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.9e-53 213.0 182 58.8
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 2.5e-53 212.6 172 63.4
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 4.3e-53 211.8 185 61.6
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 5.6e-53 211.5 186 60.2
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 7.3e-53 211.1 199 58.3
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.2e-52 210.3 187 61.5
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 1.6e-52 209.9 184 59.2
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.8e-52 209.1 114 86.0
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 2.8e-52 209.1 183 61.2
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 3.6e-52 208.8 184 58.7
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 4.7e-52 208.4 144 72.9
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 8.0e-52 207.6 187 57.8
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 1.0e-51 207.2 183 59.6
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 1.0e-51 207.2 187 58.3
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 1.0e-51 207.2 179 59.2
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 2.3e-51 206.1 120 81.7
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 4.0e-51 205.3 205 55.1
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 5.2e-51 204.9 184 58.7
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 2.0e-50 203.0 185 58.4
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 2.0e-50 203.0 183 57.9
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 3.4e-50 202.2 115 81.7
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 3.4e-50 202.2 187 57.8
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 4.4e-50 201.8 115 82.6
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 3.2e-48 195.7 182 61.5
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 4.1e-48 195.3 180 57.8
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 3.3e-45 185.7 118 75.4
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 4.0e-43 178.7 119 69.7
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 4.0e-43 178.7 115 74.8
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 1.5e-42 176.8 109 75.2
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.9e-40 169.9 117 65.8
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 6.2e-36 154.8 121 67.8
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 1.2e-34 150.6 111 61.3
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 1.5e-34 150.2 117 59.8
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 3.8e-33 145.6 109 60.6
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 6.4e-33 144.8 106 60.4
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 5.4e-24 115.2 172 44.2
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 6.0e-23 111.7 59 86.4
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 6.0e-23 111.7 59 86.4
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 2.5e-21 106.3 102 56.9
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 5.8e-18 95.1 66 66.7
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 7.9e-15 84.7 49 75.5
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 5.6e-13 78.6 76 55.3
Zm00001eb141840 Zea mays HOM05D042765 ORTHO05D443703 3.5e-07 59.3 153 35.3
Zm00001eb141800 Zea mays HOM05D042765 ORTHO05D444121 4.6e-07 58.9 153 36.6


User provided reference genes

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