Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 2.9e-131 471.9 234 100.0
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 2.9e-118 428.7 234 91.0
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 4.9e-102 374.8 232 79.3
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 3.9e-99 365.2 231 78.8
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 2.0e-95 352.8 231 75.3
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 3.4e-95 352.1 238 74.8
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 3.8e-94 348.6 229 75.5
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 1.9e-93 346.3 231 75.8
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 1.0e-91 340.5 235 74.0
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 8.6e-91 337.4 232 74.1
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 7.3e-90 334.3 238 73.1
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 1.2e-89 333.6 231 71.9
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 2.1e-89 332.8 232 70.3
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 4.7e-89 331.6 231 72.3
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 4.7e-89 331.6 231 71.9
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 4.7e-89 331.6 231 71.9
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.1e-88 330.5 231 72.3
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 1.1e-88 330.5 239 72.4
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 2.6e-87 325.9 234 71.4
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 5.8e-87 324.7 231 70.6
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 9.9e-87 323.9 233 70.8
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 4.9e-86 321.6 241 69.7
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 6.4e-86 321.2 233 71.7
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 8.4e-86 320.9 233 70.4
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 8.4e-86 320.9 234 70.5
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.1e-85 320.5 233 70.4
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 1.4e-85 320.1 231 71.4
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.9e-85 319.7 232 69.4
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.9e-85 319.7 232 69.4
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 3.2e-85 318.9 230 70.0
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 4.6e-84 315.1 233 69.1
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 4.6e-84 315.1 251 67.7
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 7.8e-84 314.3 234 69.7
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 7.8e-84 314.3 236 68.6
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 2.3e-83 312.8 240 67.9
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 3.0e-83 312.4 236 68.2
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 3.0e-83 312.4 236 67.8
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 3.9e-83 312.0 234 68.8
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 3.9e-83 312.0 234 68.8
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 3.9e-83 312.0 235 68.1
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 5.1e-83 311.6 238 67.6
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 6.6e-83 311.2 234 69.2
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 6.6e-83 311.2 233 68.2
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 1.1e-82 310.5 236 66.9
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.5e-82 310.1 236 66.9
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 1.9e-82 309.7 230 68.3
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.5e-82 309.3 236 67.4
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 3.3e-82 308.9 235 68.5
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 4.3e-82 308.5 238 67.2
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 7.3e-82 307.8 237 67.5
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 2.1e-81 306.2 208 74.5
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 2.1e-81 306.2 237 68.4
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 2.1e-81 306.2 243 65.4
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 4.8e-81 305.1 237 66.7
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 2.4e-80 302.8 243 65.0
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 3.1e-80 302.4 246 62.2
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 1.2e-79 300.4 238 66.0
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 1.2e-79 300.4 224 70.1
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 4.5e-79 298.5 234 67.1
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.7e-78 296.6 309 55.3
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 3.8e-78 295.4 236 64.8
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 3.8e-78 295.4 239 64.9
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 4.9e-78 295.0 227 64.3
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 8.4e-78 294.3 223 68.2
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 1.1e-77 293.9 229 65.1
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 3.2e-77 292.4 248 62.9
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 9.3e-77 290.8 238 63.0
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 3.5e-76 288.9 231 65.4
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 4.6e-76 288.5 232 64.2
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 6.0e-76 288.1 206 70.9
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 7.9e-76 287.7 240 63.8
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 1.0e-75 287.3 234 63.7
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 1.8e-75 286.6 233 63.5
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 3.9e-75 285.4 231 62.3
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.1e-74 283.9 261 57.5
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 9.6e-74 280.8 231 62.3
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.1e-72 277.3 240 62.9
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 5.8e-71 271.6 238 60.5
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.2e-70 269.6 195 70.8
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 2.2e-70 269.6 239 61.5
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 6.0e-68 261.5 256 57.0
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.3e-67 259.6 174 73.0
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 4.3e-66 255.4 164 74.4
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 1.3e-65 253.8 195 66.2
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 5.3e-64 248.4 218 60.6
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 6.9e-64 248.1 159 76.7
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 1.3e-62 243.8 230 57.4
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 8.4e-62 241.1 159 75.5
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 2.5e-61 239.6 162 72.2
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 4.2e-61 238.8 159 74.8
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 9.3e-61 237.7 235 57.0
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 7.9e-60 234.6 201 63.2
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 3.9e-59 232.3 161 70.8
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 8.2e-57 224.6 173 67.6
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 5.5e-53 211.8 195 60.0
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 2.0e-42 176.8 109 77.1
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 2.6e-39 166.4 129 63.6
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 2.2e-38 163.3 133 63.2
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 1.4e-32 144.1 94 75.5
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.4e-27 127.5 111 58.6
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.2e-23 114.4 91 61.5
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 7.7e-23 111.7 102 59.8
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.9e-21 107.1 77 71.4
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 2.0e-18 97.1 74 62.2
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 2.7e-15 86.7 61 68.9
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 7.7e-15 85.1 67 64.2
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 9.8e-10 68.2 72 52.8
Potri.007G083100 Populus trichocarpa HOM05D007255 ORTHO05D009052 1.3e-09 67.8 36 88.9


User provided reference genes

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