Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 1.1e-107 393.3 198 100.0
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 9.2e-102 373.6 198 94.4
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 1.1e-67 260.4 217 64.5
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 1.5e-67 260.0 199 68.8
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 4.8e-66 255.0 197 65.5
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 6.2e-66 254.6 195 67.7
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 6.2e-66 254.6 197 65.0
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 6.2e-66 254.6 191 69.1
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 8.1e-66 254.2 195 68.7
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 8.1e-66 254.2 196 68.9
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 4.0e-65 251.9 200 66.0
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 5.3e-65 251.5 195 66.7
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 2.0e-64 249.6 200 65.5
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 4.5e-64 248.4 188 64.9
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 1.0e-63 247.3 205 64.9
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 1.3e-63 246.9 191 66.0
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 1.3e-63 246.9 200 64.0
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 1.3e-63 246.9 202 65.3
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 1.7e-63 246.5 192 67.2
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 2.2e-63 246.1 194 67.0
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 2.9e-63 245.7 186 68.8
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 2.9e-63 245.7 186 68.8
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 2.9e-63 245.7 191 68.6
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 2.9e-63 245.7 192 66.1
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 1.4e-62 243.4 194 63.9
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 1.4e-62 243.4 196 64.3
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 1.9e-62 243.0 194 66.0
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 2.5e-62 242.7 194 66.5
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 2.5e-62 242.7 200 65.0
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 4.2e-62 241.9 192 65.6
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 5.5e-62 241.5 206 59.2
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 9.3e-62 240.7 191 66.0
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 1.2e-61 240.4 192 65.1
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 1.2e-61 240.4 192 65.1
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 1.6e-61 240.0 195 61.5
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 1.6e-61 240.0 196 65.8
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 1.6e-61 240.0 192 66.7
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 2.7e-61 239.2 199 61.8
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 3.5e-61 238.8 190 66.3
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 6.0e-61 238.0 202 63.9
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 7.9e-61 237.7 202 63.9
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 1.0e-60 237.3 200 63.5
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 1.3e-60 236.9 199 62.8
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 1.8e-60 236.5 199 64.3
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 2.3e-60 236.1 197 64.0
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 3.0e-60 235.7 192 64.6
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 6.7e-60 234.6 191 61.8
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 6.7e-60 234.6 190 64.7
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 1.5e-59 233.4 183 60.7
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 3.3e-59 232.3 179 64.2
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 4.3e-59 231.9 197 62.9
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 7.4e-59 231.1 186 62.9
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 2.1e-58 229.6 197 61.9
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 2.8e-58 229.2 192 61.5
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 3.7e-58 228.8 182 61.5
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 1.4e-57 226.9 214 60.7
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 2.4e-57 226.1 183 62.3
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 6.9e-57 224.6 183 62.3
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 9.0e-57 224.2 194 58.8
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 9.0e-57 224.2 206 55.8
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 1.2e-56 223.8 195 57.9
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 1.2e-56 223.8 188 62.8
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 2.9e-55 219.2 200 55.0
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 5.0e-55 218.4 198 57.1
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.1e-54 217.2 201 59.2
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 1.2e-53 213.8 201 54.7
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 1.8e-52 209.9 190 57.9
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 1.8e-52 209.9 200 55.0
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 3.9e-52 208.8 191 57.6
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 5.1e-52 208.4 193 57.0
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 1.1e-51 207.2 191 58.6
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 5.7e-51 204.9 190 58.4
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 5.7e-51 204.9 169 61.5
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 1.3e-50 203.8 191 58.6
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.8e-50 202.6 225 54.7
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 1.1e-49 200.7 241 49.4
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 1.4e-49 200.3 159 60.4
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 4.1e-49 198.7 187 55.6
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 5.3e-49 198.4 192 51.0
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.0e-48 196.4 213 54.9
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 2.0e-48 196.4 172 63.4
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 1.7e-47 193.4 142 73.9
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 2.2e-47 193.0 142 64.8
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.4e-46 190.3 208 47.1
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 6.1e-45 184.9 144 68.1
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 2.3e-44 183.0 165 58.8
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 2.5e-43 179.5 138 62.3
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.3e-42 177.2 142 66.2
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 1.3e-42 177.2 134 63.4
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 1.3e-42 177.2 186 57.0
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 2.8e-42 176.0 138 58.0
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 1.5e-40 170.2 117 64.1
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 3.6e-37 159.1 155 49.7
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 4.7e-37 158.7 136 52.9
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 5.1e-36 155.2 127 63.8
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 2.6e-35 152.9 279 36.2
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 2.8e-34 149.4 265 37.0
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 8.2e-34 147.9 125 63.2
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 1.8e-33 146.7 91 80.2
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 4.1e-33 145.6 113 66.4
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 5.2e-28 128.6 164 47.6
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 2.0e-24 116.7 103 62.1
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 1.7e-23 113.6 106 58.5
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 8.0e-21 104.8 86 59.3
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.2e-19 100.9 198 35.9
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 3.4e-19 99.4 65 70.8
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 1.3e-18 97.4 75 65.3
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 1.8e-17 93.6 108 39.8
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 4.7e-13 79.0 66 62.1
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 8.0e-13 78.2 109 42.2
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 2.0e-11 73.6 84 48.8
RcHm_v2.0_Chr3g0494981 Rosa chinensis HOM05D002397 ORTHO05D002667 3.5e-08 62.8 150 30.0
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 1.3e-07 60.8 133 30.8
Gohir.D13G000600 Gossypium hirsutum HOM05D002397 ORTHO05D002667 1.7e-07 60.5 151 29.1
Gorai.013G000500 Gossypium raimondii HOM05D002397 ORTHO05D002667 1.7e-07 60.5 151 29.1
Cre06.g273000 Chlamydomonas reinhardtii HOM05D002397 ORTHO05D002667 2.3e-07 60.1 113 31.9
EL10Ac3g07388 Beta vulgaris HOM05D002397 ORTHO05D002667 2.9e-07 59.7 152 28.3
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.9e-07 59.7 87 31.0
Hma1.2p1_1005F.1_g246900 Hydrangea macrophylla HOM05D002397 ORTHO05D002667 3.8e-07 59.3 144 28.5
Oeu034906.1 Olea europaea HOM05D002397 ORTHO05D002667 3.8e-07 59.3 150 29.3
Migut.L00011 Erythranthe guttata HOM05D002397 ORTHO05D002667 5.0e-07 58.9 140 30.7
PSO675G0625 Papaver somniferum HOM05D002397 ORTHO05D002667 5.0e-07 58.9 152 26.3
PSO017G1677 Papaver somniferum HOM05D002397 ORTHO05D002667 6.6e-07 58.5 152 26.3
PGR004G1811 Punica granatum HOM05D002397 ORTHO05D002667 6.6e-07 58.5 155 27.1
SEGI_32624 Sequoiadendron giganteum HOM05D002397 ORTHO05D002667 8.6e-07 58.2 150 26.7
MSTRG.10759 Avicennia marina HOM05D002397 ORTHO05D002667 1.1e-06 57.8 158 29.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.1e-06 57.8 81 35.8
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 1.1e-06 57.8 104 30.8
QL11p016263 Quercus lobata HOM05D002397 ORTHO05D002667 1.1e-06 57.8 149 29.5
AL1G49390 Arabidopsis lyrata HOM05D002397 ORTHO05D002667 1.5e-06 57.4 136 27.9
Carub.0001s2956 Capsella rubella HOM05D002397 ORTHO05D002667 1.5e-06 57.4 141 27.7
AUR62020953 Chenopodium quinoa HOM05D002397 ORTHO05D002667 1.5e-06 57.4 150 26.0
ECA238G1645 Erigeron canadensis HOM05D002397 ORTHO05D002667 1.5e-06 57.4 140 30.0
Lsat_1_v5_gn_2_62881 Lactuca sativa HOM05D002397 ORTHO05D002667 1.5e-06 57.4 118 29.7
Psat7g129840 Pisum sativum HOM05D002397 ORTHO05D002667 1.5e-06 57.4 104 29.8
THA.LOC104812704 Tarenaya hassleriana HOM05D002397 ORTHO05D002667 1.5e-06 57.4 101 30.7
TAR629G2980 Trochodendron aralioides HOM05D002397 ORTHO05D002667 1.5e-06 57.4 113 28.3
C07p14570 Brassica napus HOM05D002397 ORTHO05D002667 1.9e-06 57.0 137 28.5
BolC7t41956H Brassica oleracea HOM05D002397 ORTHO05D002667 1.9e-06 57.0 137 28.5
Medtr4g084190 Medicago truncatula HOM05D002397 ORTHO05D002667 1.9e-06 57.0 156 29.5
Nn7g38244 Nelumbo nucifera HOM05D002397 ORTHO05D002667 1.9e-06 57.0 131 28.2
CSS0030347 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 2.5e-06 56.6 131 28.2
CSS0046926 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 2.5e-06 56.6 150 26.7
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 2.5e-06 56.6 101 30.7
PGR142G3425 Punica granatum HOM05D002397 ORTHO05D002667 2.5e-06 56.6 151 28.5
SGA_v2.0_scaffold66G22344 Striga asiatica HOM05D002397 ORTHO05D002667 2.5e-06 56.6 152 28.3
TPR.G38253 Trifolium pratense HOM05D002397 ORTHO05D002667 2.5e-06 56.6 151 27.8
AagrBONN_evm.TU.Sc2ySwM_228.4317 Anthoceros agrestis HOM05D002397 ORTHO05D002667 3.3e-06 56.2 106 32.1
Ca_18753_v3 Cicer arietinum L. HOM05D002397 ORTHO05D002667 3.3e-06 56.2 144 27.8
Ciclev10016837m.g Citrus clementina HOM05D002397 ORTHO05D002667 3.3e-06 56.2 143 30.8
A07p09470 Brassica napus HOM05D002397 ORTHO05D002667 4.3e-06 55.8 136 29.4
BraA07t28743Z Brassica rapa HOM05D002397 ORTHO05D002667 4.3e-06 55.8 136 29.4
Thhalv10009998m.g Eutrema salsugineum HOM05D002397 ORTHO05D002667 4.3e-06 55.8 141 27.0
FvH4_1g29350 Fragaria vesca HOM05D002397 ORTHO05D002667 4.3e-06 55.8 146 28.1
Hund19045 Selenicereus undatus HOM05D002397 ORTHO05D002667 4.3e-06 55.8 150 28.0
Migut.J01593 Erythranthe guttata HOM05D002397 ORTHO05D002667 5.6e-06 55.5 148 27.7
Glyma.15G161000 Glycine max HOM05D002397 ORTHO05D002667 5.6e-06 55.5 141 29.8
Manes.16G056900 Manihot esculenta HOM05D002397 ORTHO05D002667 5.6e-06 55.5 139 28.8
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 7.3e-06 55.1 167 26.9
Migut.D02122 Erythranthe guttata HOM05D002397 ORTHO05D002667 7.3e-06 55.1 133 28.6
FAN26G1705 Fragaria x ananassa HOM05D002397 ORTHO05D002667 7.3e-06 55.1 146 26.7
FAN28G1421 Fragaria x ananassa HOM05D002397 ORTHO05D002667 7.3e-06 55.1 146 26.7
HanXRQChr14g0447211 Helianthus annuus HOM05D002397 ORTHO05D002667 7.3e-06 55.1 133 27.8
Sp1g26980 Schrenkiella parvula HOM05D002397 ORTHO05D002667 7.3e-06 55.1 142 26.8
Sopen02g017870 Solanum pennellii HOM05D002397 ORTHO05D002667 7.3e-06 55.1 106 31.1
unitig_0.g921 Utricularia gibba HOM05D002397 ORTHO05D002667 7.3e-06 55.1 128 26.6
HPP92_004188 Vanilla planifolia HOM05D002397 ORTHO05D002667 7.3e-06 55.1 126 26.2
ATR0307G077 Amborella trichopoda HOM05D002397 ORTHO05D002667 9.5e-06 54.7 149 26.8
Gohir.A13G001100 Gossypium hirsutum HOM05D002397 ORTHO05D002667 9.5e-06 54.7 122 29.5
HanXRQChr17g0539621 Helianthus annuus HOM05D002397 ORTHO05D002667 9.5e-06 54.7 154 26.6
Nitab4.5_0001288g0140 Nicotiana tabacum HOM05D002397 ORTHO05D002667 9.5e-06 54.7 131 28.2
Phvul.009G240300 Phaseolus vulgaris HOM05D002397 ORTHO05D002667 9.5e-06 54.7 113 27.4
SalBow6G0014 Salvia bowleyana HOM05D002397 ORTHO05D002667 9.5e-06 54.7 141 29.1
SalBow6G7242 Salvia bowleyana HOM05D002397 ORTHO05D002667 9.5e-06 54.7 141 29.1


User provided reference genes

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