Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 3.5e-245 851.3 459 100.0
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 3.0e-188 662.1 460 85.0
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 8.4e-98 361.7 467 56.3
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 3.5e-96 356.3 453 50.8
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 3.1e-92 343.2 464 56.5
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 6.4e-90 335.5 454 50.2
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.0e-84 316.2 463 47.1
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 4.2e-81 306.2 473 48.6
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.6e-80 304.3 463 46.2
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.7e-79 298.9 454 48.7
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.1e-78 298.1 489 51.9
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.9e-78 297.4 464 48.9
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.2e-77 293.9 464 48.7
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.8e-77 293.5 465 49.0
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 4.8e-77 292.7 456 43.9
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.8e-76 290.8 470 47.2
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.1e-76 290.0 460 50.0
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 5.3e-76 289.3 470 45.3
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.0e-71 273.5 470 50.2
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 3.6e-64 250.0 490 40.2
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.0e-63 248.4 461 41.2
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.3e-63 247.3 471 45.2
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.3e-63 247.3 471 45.2
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 3.0e-63 246.9 460 45.9
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 6.7e-63 245.7 463 44.9
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 6.7e-63 245.7 486 44.2
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 8.8e-63 245.4 460 44.8
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 7.4e-62 242.3 493 44.0
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 6.3e-61 239.2 485 39.8
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.1e-60 238.4 525 42.5
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 3.1e-60 236.9 409 42.5
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.4e-57 228.0 478 40.4
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.9e-57 227.6 526 40.9
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.6e-56 224.6 458 43.2
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 8.0e-56 222.2 475 38.9
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 5.2e-55 219.5 461 42.7
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 8.8e-55 218.8 468 38.2
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.5e-54 218.0 470 38.3
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 3.3e-54 216.9 482 44.6
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 5.7e-54 216.1 469 40.7
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 6.3e-53 212.6 471 43.3
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.4e-52 211.5 470 39.1
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.1e-52 210.3 443 38.1
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 4.1e-52 209.9 483 41.8
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 2.2e-50 204.1 469 37.3
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 7.2e-49 199.1 382 38.5
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 2.1e-48 197.6 145 69.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.0e-47 195.3 460 40.2
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.0e-47 195.3 469 37.7
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.0e-46 191.0 440 40.5
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.0e-46 191.0 440 40.5
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.6e-46 190.7 483 41.4
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 2.6e-46 190.7 250 49.2
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 8.2e-45 185.7 477 39.8
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 9.1e-44 182.2 474 35.4
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.6e-43 181.4 465 35.9
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.0e-43 181.0 609 34.2
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 2.0e-43 181.0 453 31.3
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.7e-42 177.9 604 33.6
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.1e-41 175.3 465 38.5
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 4.2e-41 173.3 190 53.7
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 1.6e-40 171.4 608 33.4
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.1e-40 171.0 600 33.0
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 2.1e-40 171.0 275 42.2
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 6.1e-40 169.5 472 36.7
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 6.1e-40 169.5 143 63.6
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.1e-40 169.5 477 39.4
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 6.1e-40 169.5 469 35.0
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 6.1e-40 169.5 448 37.1
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.0e-39 168.7 608 33.1
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 6.8e-39 166.0 473 35.3
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.2e-38 165.2 467 35.3
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.2e-38 165.2 442 34.2
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 2.6e-38 164.1 471 38.2
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 4.4e-38 163.3 477 34.8
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.7e-37 161.4 443 36.3
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.7e-37 161.4 282 42.9
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 2.2e-37 161.0 477 34.6
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 2.2e-37 161.0 477 34.6
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.8e-37 160.6 460 37.2
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 3.7e-37 160.2 463 34.1
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 6.3e-37 159.5 136 61.0
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 1.8e-36 157.9 466 33.7
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 5.4e-36 156.4 358 34.9
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 7.0e-36 156.0 470 35.1
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 9.1e-36 155.6 151 57.6
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.6e-35 154.8 458 36.5
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.7e-35 154.1 463 36.9
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.5e-35 153.7 212 47.2
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 3.5e-35 153.7 415 34.5
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 1.7e-34 151.4 133 57.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.3e-34 151.0 474 36.1
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 6.5e-34 149.4 466 32.4
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 8.6e-34 149.1 457 34.8
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 8.6e-34 149.1 474 35.7
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.5e-33 147.5 513 30.0
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.5e-33 147.5 477 36.5
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 8.0e-32 142.5 461 31.9
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.4e-31 141.7 429 32.9
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 3.0e-31 140.6 479 31.5
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.7e-29 134.8 142 50.7
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.7e-29 133.7 142 50.7
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 3.7e-29 133.7 460 30.0
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.8e-28 131.3 233 40.3
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.4e-28 131.0 144 52.1
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 4.1e-28 130.2 486 31.1
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 9.2e-28 129.0 240 40.8
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 1.2e-27 128.6 510 31.0
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.2e-27 128.6 161 49.7
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.6e-27 128.3 228 43.0
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 4.5e-27 126.7 419 32.7
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 1.3e-26 125.2 360 38.6
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.7e-26 124.8 418 34.4
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 2.9e-26 124.0 126 56.3
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 8.6e-26 122.5 120 56.7
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.9e-25 121.3 113 57.5
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 7.3e-25 119.4 251 37.1
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.1e-24 117.9 122 53.3
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 6.1e-24 116.3 118 55.1
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 8.0e-24 115.9 119 50.4
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 6.8e-23 112.8 119 48.7
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 8.9e-23 112.5 172 44.8
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.2e-22 112.1 177 42.4
Duzib133G1381 Durio zibethinus HOM05D005417 ORTHO05D002591 5.4e-20 103.2 323 40.6
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 3.3e-17 94.0 107 53.3
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 2.1e-16 91.3 64 70.3
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 4.7e-16 90.1 217 38.2
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 2.9e-13 80.9 117 41.0
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 8.3e-13 79.3 159 37.7
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.4e-12 77.8 180 34.4
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 7.0e-12 76.3 144 41.0
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 3.9e-10 70.5 127 34.6
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.5e-09 68.6 151 35.8
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.5e-09 67.8 126 34.9
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 1.6e-08 65.1 198 31.3
DCAR_004692 Daucus carota HOM05D005417 ORTHO05D002591 1.4e-07 62.0 120 37.5
SEGI_26671 Sequoiadendron giganteum HOM05D038370 ORTHO05D037583 2.3e-07 61.2 91 45.1
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 4.0e-07 60.5 120 36.7
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.5e-06 58.5 97 43.3


User provided reference genes

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