Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 7.6e-39 163.3 80 100.0
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 2.2e-22 108.6 66 78.8
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 6.5e-22 107.1 60 85.0
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 1.1e-21 106.3 60 81.7
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 1.4e-21 105.9 60 81.7
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 1.4e-21 105.9 60 81.7
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 1.4e-21 105.9 60 81.7
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 1.9e-21 105.5 60 81.7
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 3.2e-21 104.8 60 78.3
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 4.2e-21 104.4 60 80.0
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 4.2e-21 104.4 60 78.3
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 7.2e-21 103.6 60 76.7
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 7.2e-21 103.6 60 78.3
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 7.2e-21 103.6 58 81.0
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 9.4e-21 103.2 60 78.3
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 9.4e-21 103.2 61 73.8
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 9.4e-21 103.2 59 79.7
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 9.4e-21 103.2 59 79.7
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 9.4e-21 103.2 60 76.7
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 1.2e-20 102.8 60 78.3
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 1.2e-20 102.8 60 78.3
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 1.2e-20 102.8 60 78.3
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 1.2e-20 102.8 60 81.7
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 1.2e-20 102.8 59 78.0
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 1.6e-20 102.4 60 75.0
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 1.6e-20 102.4 60 75.0
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 1.6e-20 102.4 60 75.0
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 1.6e-20 102.4 58 81.0
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 2.1e-20 102.1 60 75.0
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 2.1e-20 102.1 60 80.0
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 2.7e-20 101.7 56 80.4
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 3.6e-20 101.3 60 78.3
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 3.6e-20 101.3 60 75.0
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 3.6e-20 101.3 60 73.3
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 3.6e-20 101.3 77 64.9
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 3.6e-20 101.3 60 76.7
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 3.6e-20 101.3 59 76.3
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 4.7e-20 100.9 58 82.8
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 4.7e-20 100.9 58 82.8
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 4.7e-20 100.9 58 79.3
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 4.7e-20 100.9 60 78.3
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 6.1e-20 100.5 60 75.0
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 6.1e-20 100.5 58 77.6
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 7.9e-20 100.1 60 73.3
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 7.9e-20 100.1 60 76.7
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 7.9e-20 100.1 57 80.7
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 1.0e-19 99.8 60 75.0
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 1.0e-19 99.8 59 78.0
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 1.4e-19 99.4 59 72.9
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 1.4e-19 99.4 58 74.1
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 1.4e-19 99.4 58 74.1
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 1.4e-19 99.4 59 76.3
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.4e-19 99.4 60 75.0
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 1.4e-19 99.4 60 75.0
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 1.8e-19 99.0 59 74.6
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 1.8e-19 99.0 59 76.3
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 1.8e-19 99.0 60 76.7
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 2.3e-19 98.6 60 73.3
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 2.3e-19 98.6 59 76.3
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 2.3e-19 98.6 60 75.0
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 2.3e-19 98.6 60 75.0
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 2.3e-19 98.6 60 76.7
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 2.3e-19 98.6 58 74.1
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 2.3e-19 98.6 58 79.3
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 2.3e-19 98.6 60 78.3
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 3.0e-19 98.2 55 80.0
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 3.0e-19 98.2 52 88.5
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 3.0e-19 98.2 55 80.0
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 3.0e-19 98.2 60 75.0
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 3.9e-19 97.8 55 80.0
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 3.9e-19 97.8 55 80.0
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 3.9e-19 97.8 55 80.0
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 3.9e-19 97.8 60 71.7
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 3.9e-19 97.8 60 76.7
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 5.1e-19 97.4 60 73.3
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 5.1e-19 97.4 77 63.6
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 5.1e-19 97.4 59 74.6
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 6.7e-19 97.1 54 79.6
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 8.8e-19 96.7 60 73.3
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 1.1e-18 96.3 60 75.0
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 1.1e-18 96.3 60 75.0
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 1.5e-18 95.9 57 75.4
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 2.0e-18 95.5 60 73.3
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 2.0e-18 95.5 56 76.8
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 2.0e-18 95.5 73 64.4
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 3.3e-18 94.7 60 71.7
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 5.7e-18 94.0 73 58.9
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 7.4e-18 93.6 57 75.4
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 7.4e-18 93.6 73 58.9
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 7.4e-18 93.6 55 80.0
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 7.4e-18 93.6 71 62.0
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 9.7e-18 93.2 55 74.5
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.3e-17 92.8 59 71.2
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 2.2e-17 92.0 55 76.4
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 2.8e-17 91.7 60 65.0
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 2.8e-17 91.7 54 70.4
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 2.8e-17 91.7 74 59.5
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 3.7e-17 91.3 74 59.5
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 8.2e-17 90.1 55 72.7
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 1.1e-16 89.7 53 77.4
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 1.4e-16 89.4 60 73.3
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 1.2e-15 86.3 76 55.3
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 2.6e-15 85.1 55 70.9
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 1.3e-14 82.8 94 47.9
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 2.9e-14 81.6 52 69.2
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 1.1e-13 79.7 47 83.0
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 3.2e-13 78.2 57 66.7
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 4.2e-13 77.8 57 64.9
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 9.4e-13 76.6 65 58.5
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 9.4e-13 76.6 41 82.9
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 1.2e-12 76.3 41 85.4
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 3.6e-12 74.7 41 80.5
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 3.6e-12 74.7 41 80.5
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 1.0e-11 73.2 53 69.8
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 2.3e-11 72.0 40 80.0
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 5.2e-11 70.9 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 8.8e-11 70.1 54 57.4
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 1.5e-10 69.3 40 77.5
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 3.3e-10 68.2 55 54.5
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 5.7e-10 67.4 46 65.2
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 5.7e-10 67.4 41 73.2
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 3.1e-08 61.6 38 76.3
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 7.0e-08 60.5 50 64.0


User provided reference genes

Program Settings