Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 5.2e-151 537.7 277 100.0
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.0e-142 509.2 281 94.3
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.3e-141 506.5 281 94.0
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 2.3e-135 485.7 278 89.2
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 4.0e-135 485.0 251 92.0
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 6.8e-135 484.2 251 91.6
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 6.8e-135 484.2 249 92.4
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.2e-134 483.4 278 86.7
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.5e-134 483.0 249 92.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.6e-134 482.3 283 87.6
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 5.7e-134 481.1 252 91.7
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 2.8e-133 478.8 284 86.6
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 6.3e-133 477.6 251 90.0
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 6.3e-133 477.6 278 87.1
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 8.3e-133 477.2 285 86.7
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.1e-132 476.9 253 90.1
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.1e-132 476.9 248 91.5
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.1e-132 476.9 251 90.8
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-132 476.9 277 86.6
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.4e-132 476.5 251 90.0
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.4e-132 476.5 248 91.5
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 2.4e-132 475.7 277 87.4
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.4e-132 475.7 251 90.4
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 2.4e-132 475.7 290 86.2
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.1e-132 475.3 277 87.0
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 3.1e-132 475.3 247 91.9
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 3.1e-132 475.3 251 90.0
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 4.1e-132 474.9 253 90.5
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 4.1e-132 474.9 253 90.5
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 4.1e-132 474.9 280 83.6
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 4.1e-132 474.9 279 87.5
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 9.1e-132 473.8 281 85.4
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.2e-131 473.4 286 86.0
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 1.2e-131 473.4 277 84.5
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.6e-131 473.0 249 90.4
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 1.6e-131 473.0 251 90.0
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-131 473.0 251 90.0
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-131 473.0 251 90.0
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.6e-131 473.0 285 84.9
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 2.0e-131 472.6 249 90.8
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 3.5e-131 471.9 250 91.2
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.5e-131 471.9 253 88.5
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 3.5e-131 471.9 250 90.4
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.5e-131 471.9 252 89.3
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 7.7e-131 470.7 249 90.8
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.7e-131 470.7 251 89.6
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 7.7e-131 470.7 250 90.0
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 7.7e-131 470.7 252 88.1
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.7e-130 469.5 250 89.6
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.7e-130 469.5 250 89.6
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.3e-130 469.2 250 89.2
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 90.0
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 2.9e-130 468.8 253 88.5
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 2.9e-130 468.8 249 90.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 3.8e-130 468.4 250 89.6
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.8e-130 468.4 278 86.3
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.8e-130 468.4 271 87.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 5.0e-130 468.0 249 89.6
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 8.6e-130 467.2 250 88.8
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 8.6e-130 467.2 287 85.0
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.1e-129 466.8 251 89.6
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 1.1e-129 466.8 277 84.5
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.5e-129 466.5 277 87.7
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.9e-129 466.1 249 89.6
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 2.5e-129 465.7 278 86.3
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 2.5e-129 465.7 251 88.4
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.5e-129 465.7 251 89.2
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 3.3e-129 465.3 274 83.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 4.3e-129 464.9 250 88.8
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 4.3e-129 464.9 250 88.8
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 5.6e-129 464.5 247 89.1
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 7.2e-129 464.2 281 85.8
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 9.5e-129 463.8 299 80.9
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 9.5e-129 463.8 251 88.8
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 9.5e-129 463.8 281 85.4
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.2e-128 463.4 250 88.8
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 3.6e-128 461.8 277 85.2
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 3.6e-128 461.8 277 83.0
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 3.6e-128 461.8 246 88.2
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 6.1e-128 461.1 248 87.1
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.4e-127 459.9 251 86.9
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.0e-127 458.8 276 86.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 5.2e-127 458.0 246 88.2
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 5.2e-127 458.0 249 88.4
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 6.8e-127 457.6 252 86.5
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 2.0e-126 456.1 250 86.8
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.4e-126 455.3 250 85.6
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 5.4e-124 448.0 253 85.0
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 3.9e-122 441.8 248 84.7
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 2.1e-120 436.0 248 84.3
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.6e-118 429.1 223 92.4
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 7.5e-118 427.6 265 80.0
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 7.5e-118 427.6 348 64.9
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 9.8e-118 427.2 249 83.9
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 2.2e-117 426.0 239 84.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 3.7e-117 425.2 273 75.1
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.7e-115 419.1 228 88.6
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 7.8e-115 417.5 242 82.2
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 1.3e-114 416.8 253 80.6
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 8.3e-109 397.5 250 76.0
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 2.7e-107 392.5 204 91.2
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 3.9e-98 362.1 191 92.1
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 5.8e-94 348.2 189 89.4
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.4e-92 342.8 244 68.9
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.2e-86 323.9 171 91.2
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.7e-85 320.1 171 90.6
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.1e-83 313.2 168 89.9
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 3.5e-83 312.4 181 86.2
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 8.7e-82 307.8 162 89.5
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.5e-81 306.2 183 83.6
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 3.5e-75 285.8 185 74.6
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.8e-74 283.5 164 85.4
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-73 280.0 164 84.8
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-73 279.6 164 82.9
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 5.6e-73 278.5 145 94.5
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 4.9e-69 265.4 147 89.8
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.5e-69 265.0 173 75.7
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.4e-68 263.8 155 86.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.1e-67 260.0 155 85.2
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-67 260.0 213 65.7
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.0e-66 257.7 142 86.6
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-63 247.3 156 78.2
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.0e-58 231.1 148 77.7
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 5.0e-53 212.2 189 56.1
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 3.2e-52 209.5 141 76.6
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.5e-52 208.8 151 71.5
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 3.7e-40 169.5 167 58.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 4.8e-40 169.1 93 87.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.8e-31 140.6 76 90.8
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 3.5e-30 136.3 87 81.6
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 2.7e-27 126.7 71 84.5
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 8.0e-27 125.2 129 54.3
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 3.7e-24 116.3 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.5e-17 94.4 60 71.7
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 4.4e-17 92.8 60 70.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.0e-14 84.0 46 80.4
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.5e-14 83.2 50 74.0
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 4.1e-07 59.7 64 48.4


User provided reference genes

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