Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.3e-241 839.3 431 100.0
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 8.7e-214 746.9 432 88.7
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 7.7e-170 600.9 440 74.8
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 3.9e-121 439.1 449 57.2
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.3e-95 354.4 453 48.3
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 5.3e-94 349.0 462 48.7
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.3e-92 344.4 449 49.2
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 8.4e-92 341.7 462 48.5
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 2.5e-91 340.1 450 48.2
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 4.2e-91 339.3 459 47.5
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 9.3e-91 338.2 447 48.1
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.6e-90 337.4 455 48.1
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 4.6e-90 335.9 449 48.6
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 6.7e-89 332.0 450 47.6
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 8.7e-89 331.6 457 45.5
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.5e-88 330.9 455 47.5
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 5.7e-88 328.9 463 48.4
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.4e-86 323.6 454 48.0
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.3e-86 322.4 450 46.7
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.2e-85 321.2 453 48.1
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.2e-85 321.2 461 46.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 7.7e-85 318.5 442 45.9
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 1.3e-84 317.8 452 46.7
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.2e-83 313.2 457 46.6
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 5.5e-83 312.4 449 44.8
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 7.2e-83 312.0 441 44.9
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.2e-82 311.2 453 47.9
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 7.9e-82 308.5 455 46.6
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.7e-81 305.4 450 46.2
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.1e-80 304.7 451 45.7
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 2.0e-80 303.9 449 45.4
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 4.3e-80 302.8 452 45.8
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.3e-80 302.8 455 46.2
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.3e-79 301.2 451 45.9
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.3e-76 291.2 452 44.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 6.5e-76 288.9 461 43.6
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 4.2e-75 286.2 468 43.8
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.5e-75 285.8 450 44.9
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.5e-72 277.7 456 44.1
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.5e-72 277.7 393 47.8
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.8e-71 273.5 444 43.2
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 6.3e-71 272.3 445 44.7
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.8e-70 270.8 445 44.7
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 4.5e-69 266.2 441 42.9
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.3e-68 264.6 439 42.6
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.2e-68 263.8 448 44.9
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 5.0e-68 262.7 444 42.6
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.1e-66 257.3 451 42.4
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 3.6e-66 256.5 461 41.9
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 6.7e-65 252.3 441 42.2
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 5.7e-64 249.2 446 43.0
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.8e-63 246.9 454 41.4
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 3.7e-63 246.5 443 42.0
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 8.2e-63 245.4 455 40.9
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 4.1e-62 243.0 418 41.1
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 5.3e-62 242.7 462 39.6
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 1.6e-61 241.1 440 40.5
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 2.6e-61 240.4 454 40.3
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.6e-61 240.4 455 41.3
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 3.5e-61 240.0 442 40.5
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 7.7e-61 238.8 458 40.8
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.2e-60 237.3 441 38.3
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.9e-59 234.2 444 39.2
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.9e-59 234.2 455 40.0
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 4.2e-59 233.0 451 39.5
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.8e-57 227.6 494 37.4
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.3e-57 227.3 450 37.8
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 4.0e-57 226.5 491 37.5
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 6.8e-57 225.7 451 39.9
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 8.8e-57 225.3 459 40.7
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.2e-56 224.9 495 37.0
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.5e-56 224.6 457 37.6
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 1.5e-56 224.6 440 39.5
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 3.4e-56 223.4 454 40.7
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.3e-55 221.5 447 40.9
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.3e-55 221.5 450 37.3
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.3e-55 221.5 479 37.6
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.2e-55 220.7 463 37.6
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 4.8e-55 219.5 461 38.2
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-53 214.9 380 39.7
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 2.0e-53 214.2 442 38.7
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.0e-53 214.2 462 36.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.0e-53 214.2 449 38.8
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.5e-53 213.0 437 39.4
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 5.9e-53 212.6 461 38.6
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.0e-52 211.8 438 39.3
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.2e-52 210.7 451 38.1
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.8e-52 209.9 468 37.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.0e-52 209.5 390 38.7
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 5.0e-52 209.5 441 39.9
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.1e-51 208.4 508 35.4
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 4.2e-51 206.5 448 37.3
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 9.4e-51 205.3 441 38.3
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.4e-49 201.4 434 36.9
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.0e-49 199.9 384 38.5
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 8.8e-49 198.7 455 37.1
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 2.6e-48 197.2 442 36.4
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.4e-48 196.8 442 36.4
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.4e-48 196.4 451 37.0
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.7e-48 196.1 446 38.3
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 9.8e-48 195.3 445 35.7
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.8e-47 193.7 450 36.9
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 4.9e-47 193.0 442 36.9
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 6.3e-47 192.6 462 35.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-46 191.4 424 36.1
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.4e-46 191.4 463 36.3
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.1e-46 190.3 438 35.8
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 3.1e-46 190.3 444 36.7
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 4.1e-46 189.9 439 35.5
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 1.6e-45 188.0 456 35.5
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.5e-43 181.4 441 33.8
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.9e-43 181.0 439 34.4
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.6e-42 176.8 444 37.2
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.0e-41 175.3 318 39.0
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 5.2e-41 172.9 210 49.0
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.6e-40 170.6 413 36.1
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 4.4e-40 169.9 439 33.9
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 7.5e-40 169.1 408 36.5
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 9.8e-40 168.7 456 31.6
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 9.8e-40 168.7 434 34.8
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 9.8e-40 168.7 462 35.3
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.3e-39 168.3 441 33.8
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.3e-39 168.3 459 33.6
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.3e-39 168.3 418 35.2
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.7e-39 167.9 280 43.2
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.7e-39 167.9 434 32.9
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 4.9e-39 166.4 447 34.5
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 1.1e-38 165.2 446 34.3
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.8e-38 164.5 461 34.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.2e-38 163.7 453 33.8
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.0e-36 158.7 447 33.1
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.7e-36 157.9 436 33.7
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.3e-36 157.5 444 34.2
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 5.0e-36 156.4 442 33.5
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 8.6e-36 155.6 439 33.7
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.5e-35 154.1 438 34.5
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.1e-34 151.0 441 32.4
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 4.7e-34 149.8 443 32.5
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.0e-34 149.1 441 32.7
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 8.0e-34 149.1 443 32.5
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 6.8e-33 146.0 437 32.5
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-31 141.0 437 32.0
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.7e-31 140.2 290 36.2
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.2e-30 137.1 318 36.5
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 5.4e-30 136.3 434 30.6
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 1.2e-29 135.2 430 31.4
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.9e-28 130.2 450 32.9
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.9e-28 130.2 445 33.5
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.6e-26 124.8 431 30.9
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 6.2e-26 122.9 379 35.1
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.3e-25 120.9 458 29.5
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 6.8e-25 119.4 458 30.3
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-24 118.6 388 30.9
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.2e-24 118.6 447 31.1
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 5.8e-24 116.3 368 32.6
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 9.8e-24 115.5 432 32.2
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 9.8e-24 115.5 429 29.8
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.7e-23 113.6 444 31.1
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 4.9e-23 113.2 445 29.4
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 8.3e-23 112.5 457 28.4
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.1e-22 112.1 441 31.1
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 4.1e-22 110.2 337 32.0
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.6e-21 108.2 380 32.1
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 1.3e-20 105.1 447 28.9
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.3e-20 104.4 267 38.2
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.0e-20 104.0 384 29.7
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 8.1e-18 95.9 426 27.9
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 3.7e-15 87.0 367 27.2
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.1e-14 85.5 171 39.2
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-14 85.1 178 39.9
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.2e-13 82.0 96 44.8
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 6.0e-13 79.7 201 37.3
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 1.0e-12 79.0 132 40.2
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.1e-11 75.5 184 34.8
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 8.1e-10 69.3 70 50.0
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 8.1e-10 69.3 70 50.0
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 8.1e-10 69.3 128 43.0
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 1.1e-09 68.9 147 37.4
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 1.8e-09 68.2 102 41.2
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.4e-09 67.8 365 26.6
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 6.8e-09 66.2 200 34.5
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 6.8e-09 66.2 70 47.1
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-08 65.5 446 24.4
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 2.4e-06 57.8 80 46.2
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 4.2e-06 57.0 426 25.4


User provided reference genes

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