Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 0.0e+00 1111.7 574 100.0
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 2.0e-261 905.6 538 87.9
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.8e-126 457.2 563 51.3
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.1e-122 443.7 535 49.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 8.8e-121 438.3 535 49.0
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 8.3e-119 431.8 536 48.9
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.3e-116 423.7 541 48.8
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 8.0e-114 415.2 547 47.0
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 5.9e-109 399.1 534 45.9
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.6e-107 392.5 562 45.6
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 4.4e-104 382.9 462 47.8
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.9e-101 372.5 529 44.6
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.3e-100 371.3 526 43.7
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.2e-98 364.8 529 44.0
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 2.6e-96 357.1 529 43.1
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.9e-94 350.9 670 37.2
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.8e-90 337.0 539 41.6
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 8.9e-89 332.0 460 45.0
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.7e-87 327.8 682 36.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.2e-87 327.4 649 39.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 8.3e-87 325.5 640 36.7
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.5e-83 314.7 525 40.8
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.5e-83 314.7 459 43.6
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 2.1e-82 310.8 535 39.6
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 6.8e-81 305.8 531 40.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 4.4e-80 303.1 532 41.2
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.3e-79 301.6 666 35.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 6.4e-79 299.3 542 39.9
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-78 298.5 665 35.0
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 4.1e-78 296.6 665 35.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 2.1e-77 294.3 534 40.1
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.3e-76 291.6 536 38.4
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.7e-76 291.2 542 40.6
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 8.7e-76 288.9 390 46.7
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.5e-75 288.1 483 39.8
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 6.2e-74 282.7 401 44.6
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 8.1e-74 282.3 665 34.3
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-73 282.0 665 34.4
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.9e-73 279.3 665 34.3
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.4e-72 276.9 432 42.4
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 7.6e-72 275.8 459 39.7
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.3e-71 275.0 509 37.7
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 3.8e-71 273.5 459 40.3
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.2e-69 268.5 489 38.9
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 4.6e-69 266.5 403 43.4
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 6.0e-69 266.2 740 32.3
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 7.8e-69 265.8 622 33.9
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.3e-68 265.0 241 58.9
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 3.9e-68 263.5 610 34.6
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 8.7e-68 262.3 609 33.5
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.9e-67 261.2 528 37.5
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 9.6e-67 258.8 608 33.1
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.8e-66 257.3 576 35.9
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 8.4e-63 245.7 619 33.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.4e-62 245.0 392 44.4
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.4e-62 243.0 646 32.0
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.7e-61 240.7 392 44.4
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 7.9e-61 239.2 337 45.7
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.3e-60 238.4 338 45.6
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.3e-60 238.4 518 35.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.6e-58 231.5 855 27.7
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 7.6e-56 222.6 393 36.6
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 2.9e-55 220.7 699 30.6
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.9e-55 220.7 571 32.7
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 8.4e-55 219.2 436 35.1
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.4e-54 217.6 540 34.8
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 9.3e-54 215.7 612 31.7
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 9.3e-54 215.7 526 33.7
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.1e-53 214.5 376 41.2
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 3.5e-53 213.8 716 29.7
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 6.0e-53 213.0 613 32.0
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 6.0e-53 213.0 468 33.5
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 3.0e-52 210.7 392 40.6
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 5.1e-52 209.9 278 43.2
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 5.1e-52 209.9 739 28.4
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 8.7e-52 209.1 529 33.6
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 2.1e-50 204.5 311 42.4
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.1e-49 202.2 398 40.7
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.7e-47 194.9 748 28.1
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 5.5e-46 189.9 229 42.4
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 9.3e-46 189.1 695 28.3
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.1e-45 188.0 477 36.1
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.9e-43 181.4 302 42.7
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 2.5e-43 181.0 746 27.1
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 9.7e-43 179.1 730 28.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.2e-42 177.9 622 29.1
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.8e-42 177.6 730 28.4
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 3.7e-42 177.2 708 28.7
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 8.2e-42 176.0 695 30.2
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 6.9e-41 172.9 712 29.1
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 6.9e-41 172.9 695 30.1
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 4.5e-40 170.2 719 29.5
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.3e-39 168.7 727 29.0
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.2e-39 167.9 624 28.7
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 5.0e-39 166.8 578 28.2
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.5e-38 164.5 720 28.3
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 1.6e-37 161.8 720 28.3
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.0e-36 159.1 747 26.1
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.4e-36 158.7 238 40.3
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.1e-36 156.8 746 25.7
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.4e-33 147.9 383 31.3
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 9.1e-33 146.0 524 28.4
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.2e-32 145.6 784 25.6
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.0e-32 144.8 397 32.5
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.3e-31 142.1 313 33.5
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.7e-31 141.7 254 37.4
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.2e-31 141.4 337 32.9
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 2.9e-31 141.0 545 28.1
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 3.8e-31 140.6 386 30.8
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 5.0e-31 140.2 393 32.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 8.5e-31 139.4 738 26.3
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.0e-28 132.5 464 27.6
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.8e-28 131.7 154 46.8
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 5.1e-28 130.2 113 57.5
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 8.2e-26 122.9 183 46.4
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.4e-24 117.5 543 27.1
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.7e-23 115.2 359 31.2
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.2e-23 114.8 324 33.0
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 5.0e-23 113.6 533 27.4
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 8.5e-23 112.8 359 30.9
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 7.2e-22 109.8 254 33.1
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.6e-21 107.5 381 29.1
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.6e-21 107.5 381 29.1
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 3.0e-20 104.4 257 31.5
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 8.5e-15 86.3 514 24.3
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 5.5e-14 83.6 109 42.2
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 9.4e-14 82.8 108 45.4
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 3.6e-13 80.9 246 33.3
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 6.1e-13 80.1 108 47.2
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.6e-08 65.5 98 42.9


User provided reference genes

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