Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 0.0e+00 1526.9 761 100.0
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.8e-308 1061.6 703 78.7
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 5.4e-275 951.0 704 70.9
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 3.5e-274 948.3 704 70.9
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 9.3e-227 790.8 710 60.4
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.4e-219 766.9 711 58.6
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 6.0e-218 761.5 707 59.1
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.3e-217 760.4 706 57.9
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.3e-216 755.7 706 57.6
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 7.4e-216 754.6 758 55.0
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.8e-215 752.7 706 57.5
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.4e-214 749.6 708 57.8
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 4.5e-213 745.3 704 58.4
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.2e-212 743.0 708 57.3
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 1.6e-210 736.9 670 59.1
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 2.7e-210 736.1 666 59.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-206 724.2 704 57.4
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 7.7e-205 718.0 707 56.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 7.2e-203 711.4 709 55.4
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.2e-197 694.1 716 53.9
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 2.1e-194 683.3 650 57.4
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.7e-191 672.5 715 51.7
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.8e-190 670.2 717 51.0
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 3.1e-190 669.5 676 53.6
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.1e-190 669.1 708 53.5
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.0e-189 666.8 774 50.0
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 3.5e-189 666.0 602 59.6
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.5e-189 666.0 708 53.4
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 4.5e-189 665.6 728 50.5
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 4.5e-189 665.6 708 52.5
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 5.9e-189 665.2 712 51.3
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.7e-188 663.7 704 52.8
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 3.8e-188 662.5 700 53.0
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.9e-187 660.2 794 49.1
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.5e-187 659.8 710 51.3
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 3.2e-187 659.4 714 51.4
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 4.2e-187 659.1 713 51.1
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.2e-186 657.5 715 51.3
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.6e-186 657.1 711 51.6
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 4.7e-186 655.6 713 50.9
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 8.0e-186 654.8 708 53.2
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.0e-185 654.4 711 51.5
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.4e-185 654.1 717 49.7
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.8e-185 653.7 728 50.5
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 2.3e-185 653.3 708 51.4
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 5.2e-185 652.1 707 51.6
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.0e-184 650.2 724 50.7
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.6e-184 649.8 715 50.3
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.3e-183 647.5 724 50.1
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 1.7e-183 647.1 708 51.4
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.8e-183 646.4 677 53.5
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.1e-182 644.4 729 49.2
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.1e-182 644.4 683 51.8
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 7.0e-182 641.7 704 50.4
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 9.1e-182 641.3 749 49.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 2.0e-181 640.2 724 49.4
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 2.6e-181 639.8 670 51.9
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 5.9e-181 638.6 707 50.8
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 1.7e-180 637.1 710 50.3
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.2e-180 636.7 662 52.4
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 1.5e-179 634.0 731 49.5
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 1.9e-179 633.6 652 53.4
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 3.2e-179 632.9 705 50.4
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 4.2e-179 632.5 704 50.3
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 7.2e-179 631.7 716 49.7
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.1e-178 630.2 751 49.9
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 6.1e-178 628.6 632 54.3
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.4e-177 627.5 721 50.1
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.4e-177 627.5 678 51.3
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.8e-177 627.1 667 52.6
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 2.3e-177 626.7 667 52.2
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.8e-177 625.2 751 50.1
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.2e-176 624.4 754 49.3
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.2e-176 624.4 750 47.5
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 2.0e-176 623.6 718 49.6
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 7.5e-176 621.7 716 49.3
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 2.2e-175 620.2 630 54.3
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 2.8e-175 619.8 715 50.1
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.8e-174 617.1 747 48.7
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.8e-174 617.1 673 51.0
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 4.1e-174 615.9 626 53.8
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.0e-174 615.1 719 48.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.0e-173 613.6 707 47.8
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.7e-173 613.2 747 48.6
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 3.8e-172 609.4 710 48.5
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.1e-171 607.8 701 48.2
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 9.4e-171 604.7 692 52.2
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.4e-169 600.9 713 47.8
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 4.0e-169 599.4 722 48.3
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.6e-168 596.7 775 46.5
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.3e-167 594.3 722 48.1
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 2.2e-167 593.6 715 48.1
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 2.8e-167 593.2 710 47.6
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 6.3e-167 592.0 741 47.6
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 1.1e-166 591.3 710 47.6
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.1e-166 589.3 680 49.4
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.3e-164 584.3 716 45.8
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.7e-164 583.9 723 47.2
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 3.8e-164 582.8 669 48.9
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.3e-163 579.7 734 46.2
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 4.2e-163 579.3 706 47.2
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.6e-162 577.4 634 51.7
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 8.0e-162 575.1 715 46.7
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.0e-161 574.7 716 46.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.4e-161 574.3 716 46.4
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.8e-161 573.9 715 47.0
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 5.2e-161 572.4 718 47.2
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 8.9e-161 571.6 656 48.9
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 6.3e-159 565.5 713 45.6
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.1e-158 564.7 715 45.6
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 2.4e-158 563.5 718 46.8
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.1e-158 562.8 680 47.8
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 4.1e-158 562.8 688 46.9
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.0e-157 560.5 706 47.0
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 4.5e-157 559.3 727 46.1
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 5.0e-156 555.8 723 45.0
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 3.3e-155 553.1 696 45.1
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 5.6e-155 552.4 705 44.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.5e-155 551.6 718 45.5
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-154 551.2 693 46.9
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 2.8e-154 550.1 709 45.6
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 3.2e-150 536.6 741 43.7
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.6e-149 534.3 558 53.8
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.0e-148 531.6 710 43.9
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.6e-144 516.9 702 42.2
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 4.9e-143 512.7 671 45.2
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 6.0e-141 505.8 682 44.7
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.7e-135 487.6 487 55.4
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.0e-132 478.4 729 40.3
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 9.6e-131 471.9 693 43.1
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 8.9e-129 465.3 771 40.1
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.0e-128 464.2 419 57.8
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.9e-127 459.5 552 46.7
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.1e-123 448.4 468 50.9
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 6.0e-117 426.0 723 39.0
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.3e-116 424.9 542 45.9
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 2.3e-100 370.9 664 38.0
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.9e-100 370.2 395 52.2
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.7e-100 369.4 668 36.8
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-99 368.6 665 35.8
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 5.7e-99 366.3 704 35.1
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.3e-97 359.8 690 36.4
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 9.0e-97 359.0 669 36.0
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.2e-96 358.6 708 34.9
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 7.1e-94 349.4 729 35.7
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 9.3e-94 349.0 674 35.6
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.7e-92 342.8 661 36.3
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.9e-91 341.3 663 35.0
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.4e-86 325.1 821 31.8
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 7.4e-83 312.8 607 34.1
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.8e-82 310.8 563 36.2
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 3.1e-81 307.4 312 51.0
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 1.9e-78 298.1 425 43.1
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 2.5e-78 297.7 741 31.4
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.5e-70 271.9 295 54.9
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.5e-70 270.0 557 35.0
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 7.0e-65 253.1 189 67.2
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.1e-62 245.7 186 68.8
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-62 245.7 531 33.0
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 3.4e-51 207.6 329 36.8
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 7.0e-33 146.7 106 66.0
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 4.3e-22 110.9 180 40.6
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.7e-21 107.5 112 50.0
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.7e-18 99.0 109 53.2
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.2e-18 98.6 301 28.2
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.8e-12 79.0 134 39.6
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 4.4e-11 74.3 299 27.8
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 9.9e-11 73.2 49 67.3
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.8e-10 71.2 44 77.3
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 6.4e-10 70.5 48 72.9
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.9e-09 68.9 53 66.0
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.1e-07 60.8 80 43.8


User provided reference genes

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