Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 0.0e+00 1283.9 630 100.0
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 0.0e+00 1099.7 583 93.3
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 8.7e-271 936.8 586 78.3
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 2.8e-261 905.2 584 75.5
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 1.4e-257 892.9 585 74.5
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 5.5e-257 891.0 584 73.6
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 2.7e-256 888.6 584 73.5
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 1.3e-255 886.3 585 74.0
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 3.9e-255 884.8 585 73.7
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 8.7e-255 883.6 583 73.1
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.9e-254 882.5 583 72.9
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 1.3e-253 879.8 585 71.8
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 8.2e-253 877.1 583 72.7
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 2.4e-252 875.5 587 73.6
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.5e-251 871.3 587 72.6
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 8.4e-250 867.1 586 72.5
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.2e-248 863.2 587 71.9
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 6.1e-248 860.9 584 71.9
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 7.9e-248 860.5 584 71.7
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.3e-242 843.2 638 66.3
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 2.9e-242 842.0 626 67.3
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 7.2e-241 837.4 583 69.8
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 2.7e-240 835.5 562 72.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 2.3e-239 832.4 548 74.1
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 5.1e-239 831.2 581 69.0
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 1.1e-238 830.1 584 69.2
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 3.3e-238 828.6 582 68.2
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 9.7e-238 827.0 585 69.9
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.4e-236 823.2 584 68.8
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 1.2e-235 820.1 584 67.3
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 1.2e-235 820.1 584 67.0
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.5e-235 819.7 585 67.5
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.9e-235 817.8 582 67.4
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 7.7e-235 817.4 583 67.8
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 2.2e-234 815.8 584 66.8
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 3.8e-234 815.1 582 67.5
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 4.2e-233 811.6 582 67.2
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 4.2e-233 811.6 584 67.5
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 2.1e-232 809.3 582 66.8
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 3.6e-232 808.5 583 66.7
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.0e-231 807.0 582 67.2
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 3.0e-231 805.4 584 67.5
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 4.4e-230 801.6 585 67.4
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 2.2e-229 799.3 583 65.7
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 4.1e-228 795.0 587 66.3
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 2.6e-227 792.3 585 66.5
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 2.6e-227 792.3 585 67.7
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.3e-226 790.0 583 65.9
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.8e-226 788.5 595 66.7
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 3.0e-223 778.9 582 66.5
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 5.2e-223 778.1 549 70.3
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.1e-222 776.9 582 66.2
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 2.6e-222 775.8 547 67.3
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 4.4e-222 775.0 584 66.8
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 1.3e-221 773.5 581 66.1
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 1.7e-221 773.1 581 65.7
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 6.3e-221 771.2 586 64.5
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 2.6e-219 765.8 582 65.1
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 4.5e-219 765.0 564 65.6
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 1.2e-216 756.9 581 64.2
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 2.6e-214 749.2 585 63.1
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 1.4e-212 743.4 585 62.6
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 2.4e-212 742.7 583 61.9
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 1.2e-211 740.3 524 67.7
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 5.9e-211 738.0 583 63.8
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.5e-210 734.6 584 63.0
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 3.6e-208 728.8 582 62.7
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 2.3e-207 726.1 581 62.7
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 4.0e-207 725.3 548 66.4
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 3.4e-206 722.2 546 65.8
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 2.9e-202 709.1 550 65.6
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.6e-200 703.4 609 58.9
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 3.6e-200 702.2 478 73.0
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 5.7e-198 694.9 548 62.6
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 7.5e-198 694.5 478 71.5
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 7.8e-195 684.5 579 58.9
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 2.9e-194 682.6 563 61.6
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.2e-192 674.9 478 69.5
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 2.6e-190 669.5 515 65.0
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 4.7e-184 648.7 707 51.6
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.3e-181 640.6 502 64.7
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 3.0e-170 602.8 616 53.1
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 5.1e-170 602.1 584 51.4
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 1.5e-169 600.5 583 53.3
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 2.8e-168 596.3 605 50.6
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 2.0e-166 590.1 501 60.9
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 4.4e-166 589.0 547 55.9
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.7e-165 587.0 547 55.4
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.4e-156 556.6 550 50.2
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 1.3e-149 534.3 425 63.3
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 4.1e-127 459.5 339 65.2
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 1.3e-125 454.5 318 68.9
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 6.7e-122 442.2 319 66.5
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 2.5e-121 440.3 320 69.1
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 3.2e-116 423.3 322 66.1
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 4.4e-113 412.9 713 36.9
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 5.9e-110 402.5 614 38.8
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.0e-109 401.7 318 61.6
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 4.1e-103 379.8 270 69.3
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 3.7e-96 356.7 279 60.2
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.8e-96 356.3 253 70.0
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.6e-94 351.3 264 65.9
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 5.9e-94 349.4 274 64.6
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 1.9e-92 344.4 606 34.0
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 1.2e-78 298.5 263 55.1
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 1.1e-76 292.0 223 62.8
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 3.2e-63 247.3 232 50.4
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 1.7e-61 241.5 212 60.8
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 2.3e-61 241.1 191 61.8
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.2e-59 235.3 140 73.6
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 2.1e-59 234.6 171 72.5
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 3.4e-57 227.3 214 57.0
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.2e-54 218.8 501 31.9
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 3.1e-50 204.1 205 53.7
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 7.3e-44 183.0 147 66.0
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 4.6e-38 163.7 188 48.9
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 4.9e-32 143.7 82 81.7
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 9.3e-31 139.4 103 59.2
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 1.3e-24 119.0 168 42.9
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.1e-20 105.9 119 48.7
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 1.1e-15 89.4 50 78.0
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 1.3e-13 82.4 88 51.1
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 9.7e-12 76.3 56 66.1
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 1.3e-08 65.9 60 53.3


User provided reference genes

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