Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 5.6e-292 1006.9 514 100.0
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.4e-273 944.1 515 93.4
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 7.6e-249 863.6 521 85.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.9e-240 835.1 517 83.8
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 4.8e-227 791.2 516 79.5
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 2.5e-223 778.9 518 78.4
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.2e-222 776.5 517 77.6
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.7e-222 774.6 518 77.8
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 6.7e-221 770.8 517 77.6
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.0e-220 769.2 520 77.7
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.6e-217 758.8 512 76.4
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.7e-216 756.1 518 75.5
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 4.7e-214 748.0 517 75.6
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 3.0e-213 745.3 516 73.6
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.1e-212 743.4 513 75.0
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 8.2e-211 737.3 516 74.8
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 8.2e-211 737.3 520 75.4
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 4.5e-209 731.5 520 73.5
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.0e-208 730.3 512 74.6
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 3.8e-208 728.4 517 73.7
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.0e-208 728.0 517 73.5
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.3e-205 719.2 519 72.3
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 3.0e-205 718.8 512 74.6
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 4.0e-205 718.4 516 73.6
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 3.7e-203 711.8 517 72.9
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.4e-202 709.9 521 71.8
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 9.1e-202 707.2 516 70.7
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 5.0e-200 701.4 517 71.8
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 8.5e-200 700.7 519 70.3
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 2.5e-199 699.1 520 71.2
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.2e-199 698.7 520 71.0
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.2e-198 696.8 516 71.3
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.6e-198 696.4 516 70.9
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 8.0e-198 694.1 518 73.0
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.3e-195 686.8 520 68.7
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.8e-194 682.9 522 69.7
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 9.1e-194 680.6 521 69.3
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.6e-193 679.9 507 69.6
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.6e-193 679.9 522 69.7
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.5e-193 678.7 525 69.1
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 4.5e-193 678.3 516 69.6
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.0e-192 677.2 516 69.0
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.7e-192 676.4 520 69.6
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 2.3e-192 676.0 508 70.1
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.9e-192 675.6 516 69.8
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 5.0e-192 674.9 506 70.0
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 8.6e-192 674.1 519 70.1
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 1.1e-191 673.7 537 69.6
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.9e-191 672.9 519 68.2
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.5e-191 672.5 517 69.8
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 3.3e-191 672.2 526 68.6
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 7.2e-191 671.0 523 67.9
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.2e-190 670.2 523 68.5
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.2e-190 670.2 517 69.8
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 3.6e-190 668.7 523 67.7
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 4.7e-190 668.3 507 69.2
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 8.0e-190 667.5 521 69.5
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.8e-189 666.4 516 69.0
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 3.0e-189 665.6 512 68.8
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 1.2e-188 663.7 513 69.2
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 1.2e-188 663.7 517 68.3
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.5e-188 663.3 512 70.1
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 2.6e-188 662.5 518 68.9
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 5.7e-188 661.4 519 68.8
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.5e-188 661.0 518 69.3
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.7e-187 659.8 513 68.2
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.9e-187 658.3 519 68.6
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.3e-187 657.9 519 68.6
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.1e-186 657.1 521 66.8
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.4e-186 656.0 517 69.2
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.2e-186 655.6 531 65.2
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 2.7e-185 652.5 524 66.0
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.7e-184 649.8 518 67.0
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 5.0e-184 648.3 519 66.3
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.5e-183 646.7 514 68.1
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 7.3e-183 644.4 510 67.5
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 7.3e-183 644.4 530 65.8
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 3.1e-181 639.0 523 66.7
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.0e-181 638.6 520 67.1
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 4.0e-181 638.6 522 68.2
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 2.0e-180 636.3 528 66.1
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 3.4e-180 635.6 507 67.3
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 3.7e-179 632.1 519 64.7
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.1e-178 630.6 530 65.7
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.4e-178 630.2 524 65.5
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.9e-178 629.8 512 67.8
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.9e-178 629.8 524 64.5
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 6.0e-177 624.8 514 66.3
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 1.7e-176 623.2 509 67.2
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 3.9e-176 622.1 509 67.0
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 3.9e-176 622.1 525 63.6
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.5e-175 619.4 512 66.8
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 4.3e-175 618.6 525 63.6
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.6e-174 616.7 516 66.3
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.4e-173 613.6 474 68.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.2e-170 602.4 467 68.1
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 6.0e-169 598.2 522 62.8
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 4.3e-167 592.0 528 62.7
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.4e-165 587.0 496 64.1
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.4e-162 576.2 535 61.3
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 7.8e-161 571.2 535 60.9
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 3.3e-159 565.8 517 62.5
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 4.7e-158 562.0 526 60.1
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 2.0e-156 556.6 465 64.1
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 2.0e-148 530.0 528 57.8
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 5.8e-148 528.5 506 60.1
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.1e-141 506.1 524 55.2
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 5.3e-141 505.4 485 59.2
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 1.5e-140 503.8 524 55.3
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.3e-139 500.7 523 54.9
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.5e-137 492.7 539 53.1
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 8.2e-126 454.9 527 51.8
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.4e-125 454.1 519 53.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.2e-124 451.1 543 50.8
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.3e-119 433.0 305 70.2
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 9.7e-111 404.8 514 48.6
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.2e-105 387.9 294 69.7
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.9e-98 364.0 513 47.2
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 6.8e-88 328.9 571 41.7
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.5e-63 248.1 283 50.9
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.3e-54 218.4 201 63.7
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.7e-54 218.0 344 42.2
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 1.9e-42 177.9 286 40.9
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 5.1e-27 126.7 99 69.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 4.5e-23 113.6 508 25.2
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.8e-23 113.2 109 55.0
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 1.1e-21 109.0 533 27.0
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.4e-21 108.6 77 74.0
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.7e-14 85.1 65 63.1
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.5e-13 80.1 63 61.9
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 2.1e-12 78.2 106 43.4
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 8.7e-11 72.8 524 23.7
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.5e-10 72.0 81 55.6


User provided reference genes

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