Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 6.0e-230 800.4 390 100.0
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 1.1e-183 646.7 414 80.2
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.2e-81 307.8 415 42.9
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 1.0e-80 304.7 344 48.3
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.8e-77 293.9 394 43.1
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 2.8e-70 270.0 410 40.2
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 3.7e-70 269.6 429 39.9
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 5.3e-69 265.8 399 40.4
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.6e-68 264.2 398 40.2
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 5.9e-68 262.3 452 38.7
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 3.8e-67 259.6 429 38.7
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 5.0e-67 259.2 416 39.2
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 2.5e-66 256.9 445 38.0
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 7.2e-66 255.4 380 43.2
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.2e-65 254.6 417 40.3
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-65 254.2 415 40.0
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-65 254.2 415 40.0
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.0e-63 247.3 436 36.2
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 2.0e-63 247.3 411 39.2
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 4.4e-63 246.1 433 36.3
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 7.5e-63 245.4 384 43.0
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 1.3e-62 244.6 407 36.6
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 2.2e-62 243.8 409 37.7
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 2.2e-62 243.8 404 37.1
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 3.7e-62 243.0 394 37.1
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.1e-61 239.6 415 35.2
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 5.3e-61 239.2 432 34.5
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 1.6e-60 237.7 428 34.8
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-60 237.3 424 34.7
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 7.7e-60 235.3 406 37.7
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 1.0e-59 235.0 412 36.7
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 1.0e-59 235.0 419 37.2
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 1.0e-59 235.0 409 38.9
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 1.3e-59 234.6 429 36.4
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 1.7e-59 234.2 422 36.0
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.7e-59 234.2 426 36.4
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 1.7e-59 234.2 409 34.7
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 2.2e-59 233.8 429 35.2
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 2.9e-59 233.4 432 35.0
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 8.5e-59 231.9 425 37.2
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 3.2e-58 229.9 359 39.6
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 9.4e-58 228.4 388 35.6
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 4.7e-57 226.1 421 32.3
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 8.0e-57 225.3 413 32.0
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 8.0e-57 225.3 421 31.6
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 1.8e-56 224.2 400 34.5
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-55 220.7 415 35.4
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 5.7e-55 219.2 443 31.2
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 7.5e-55 218.8 415 35.4
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.5e-55 218.8 415 35.4
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.3e-54 218.0 421 34.7
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 1.3e-54 218.0 395 34.7
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 2.2e-54 217.2 414 35.7
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 4.8e-54 216.1 412 35.0
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.4e-53 213.8 412 34.0
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 3.1e-53 213.4 408 34.8
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 7.0e-53 212.2 400 35.2
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 7.0e-53 212.2 412 33.0
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.2e-52 211.5 416 35.6
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 1.6e-52 211.1 397 35.0
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 2.0e-52 210.7 395 34.2
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 3.5e-52 209.9 378 36.8
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 4.5e-52 209.5 407 32.7
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.5e-51 205.7 413 33.7
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.5e-50 203.8 452 33.0
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 3.2e-50 203.4 419 33.4
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 4.2e-50 203.0 399 34.3
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 5.5e-50 202.6 447 31.3
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 9.4e-50 201.8 425 34.4
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.6e-49 201.1 424 33.7
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 6.1e-49 199.1 591 27.2
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 8.0e-49 198.7 408 34.6
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.4e-48 198.0 452 32.5
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.0e-48 196.8 452 32.7
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 4.0e-48 196.4 397 33.8
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 8.8e-48 195.3 436 32.8
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.0e-47 194.1 410 34.1
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.0e-47 194.1 325 34.8
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.6e-47 193.7 386 34.5
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.4e-47 193.4 425 31.8
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 4.4e-47 193.0 339 34.5
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 4.4e-47 193.0 417 31.9
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 9.8e-47 191.8 391 32.2
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.9e-46 189.5 445 30.1
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.3e-46 189.1 439 31.7
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 1.1e-45 188.3 403 33.5
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.1e-45 188.3 363 34.4
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.4e-45 188.0 390 32.1
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.4e-45 188.0 314 35.4
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 3.1e-45 186.8 436 31.2
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.9e-44 182.6 454 31.1
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 2.9e-43 180.3 391 32.5
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 2.9e-43 180.3 393 31.8
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 1.1e-42 178.3 367 32.2
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.9e-42 177.6 397 30.5
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 3.3e-42 176.8 315 35.9
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 4.3e-42 176.4 393 31.0
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 4.7e-41 172.9 333 36.9
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.0e-40 171.8 349 31.5
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 3.0e-40 170.2 412 31.8
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 8.9e-40 168.7 400 31.5
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 2.0e-39 167.5 366 33.1
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-38 164.9 367 30.8
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.8e-37 161.0 398 32.2
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 4.7e-33 146.4 184 44.6
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 1.4e-32 144.8 289 36.7
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 1.7e-30 137.9 180 38.9
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.9e-30 137.1 331 31.1
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 1.9e-29 134.4 373 28.4
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.5e-28 130.2 168 42.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 7.8e-28 129.0 380 27.4
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 7.8e-28 129.0 168 42.3
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.8e-28 129.0 168 42.3
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.7e-27 127.9 168 41.7
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 2.3e-27 127.5 162 44.4
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 3.0e-27 127.1 156 46.2
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 4.3e-26 123.2 181 38.7
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 6.2e-25 119.4 179 35.2
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 1.4e-24 118.2 155 41.9
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 6.8e-24 115.9 197 35.0
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 2.6e-23 114.0 154 39.0
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 3.4e-23 113.6 219 33.3
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.7e-22 111.3 152 42.8
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 1.7e-22 111.3 183 34.4
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 2.9e-22 110.5 200 37.5
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.2e-21 107.1 209 32.5
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 4.1e-21 106.7 188 34.0
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 1.6e-20 104.8 208 33.7
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.6e-20 104.8 216 27.8
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.1e-20 104.4 279 31.9
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 2.1e-20 104.4 183 33.3
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 2.7e-20 104.0 183 32.8
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.3e-19 101.7 169 38.5
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 1.7e-19 101.3 183 31.7
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 2.3e-19 100.9 101 47.5
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.1e-19 99.8 345 26.7
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 6.6e-19 99.4 183 30.6
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 1.5e-18 98.2 183 31.1
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-18 97.8 207 32.4
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-18 97.8 189 31.7
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 2.5e-18 97.4 209 31.6
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 3.3e-18 97.1 100 48.0
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 7.3e-18 95.9 182 30.8
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 7.3e-18 95.9 182 30.8
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 7.3e-18 95.9 182 30.8
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 1.2e-17 95.1 182 30.2
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 1.6e-17 94.7 182 30.2
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 2.1e-17 94.4 182 30.2
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 2.1e-17 94.4 183 31.1
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 2.8e-17 94.0 182 30.2
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 2.8e-17 94.0 127 38.6
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 3.6e-17 93.6 117 41.9
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 8.1e-17 92.4 184 29.9
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 1.1e-16 92.0 182 31.9
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 1.4e-16 91.7 185 33.5
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 3.1e-16 90.5 185 29.2
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 6.8e-16 89.4 184 29.3
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 1.2e-15 88.6 179 28.5
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-15 88.6 102 42.2
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.5e-15 88.2 139 37.4
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.8e-15 86.3 87 46.0
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 5.8e-15 86.3 108 42.6
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 4.9e-14 83.2 166 32.5
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 8.4e-14 82.4 139 34.5
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 3.2e-13 80.5 182 34.1
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 4.1e-13 80.1 76 52.6
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 2.7e-12 77.4 86 39.5
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 2.7e-12 77.4 130 31.5
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 3.9e-11 73.6 115 35.7
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 6.6e-11 72.8 181 29.8
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.5e-10 71.6 99 36.4
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.5e-10 70.9 115 35.7
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 6.2e-09 66.2 219 26.5
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 8.1e-09 65.9 73 43.8
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 1.1e-08 65.5 74 40.5
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 1.4e-08 65.1 98 39.8
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 3.1e-08 63.9 152 29.6
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 6.9e-08 62.8 228 26.8
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 1.5e-07 61.6 89 37.1
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 1.5e-07 61.6 130 32.3
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 1.5e-07 61.6 150 28.7
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 5.8e-07 59.7 130 32.3
EL10Ac9g22882 Beta vulgaris HOM05D003575 ORTHO05D003587 7.6e-07 59.3 74 36.5


User provided reference genes

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