Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 5.7e-278 960.3 490 100.0
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 1.4e-228 796.2 447 91.3
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.2e-160 569.7 460 69.1
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 8.2e-160 567.8 457 68.3
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 3.1e-159 565.8 462 69.3
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.2e-158 563.9 462 67.7
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 2.6e-158 562.8 450 68.4
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 7.7e-158 561.2 462 68.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 2.9e-157 559.3 405 72.6
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.9e-156 556.6 462 68.0
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.2e-155 553.9 463 67.0
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 1.6e-155 553.5 406 72.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.6e-155 552.4 456 67.5
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 8.0e-155 551.2 455 67.9
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 1.4e-154 550.4 450 68.9
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 4.0e-154 548.9 457 67.0
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 8.8e-154 547.7 457 67.2
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 2.0e-153 546.6 453 67.8
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 2.6e-153 546.2 461 66.6
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.7e-152 543.5 448 67.9
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 2.2e-152 543.1 407 71.3
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 2.2e-152 543.1 454 64.8
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 2.2e-152 543.1 355 78.6
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.7e-152 542.3 458 66.2
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 8.3e-152 541.2 437 68.0
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.8e-151 540.0 454 66.1
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.4e-151 539.7 443 65.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 2.0e-150 536.6 484 62.2
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.0e-150 536.6 460 65.9
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 2.7e-150 536.2 457 65.4
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 3.5e-150 535.8 458 65.7
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 4.5e-150 535.4 447 65.1
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 7.7e-150 534.6 504 61.7
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.3e-149 533.9 460 65.7
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 2.2e-149 533.1 460 63.9
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 8.5e-149 531.2 414 69.8
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 8.5e-149 531.2 438 67.4
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.9e-148 530.0 452 65.3
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 9.4e-148 527.7 451 65.6
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 9.4e-148 527.7 428 64.7
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 2.1e-147 526.6 449 65.3
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.1e-147 526.6 447 63.8
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 2.7e-147 526.2 492 61.6
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 6.1e-147 525.0 444 66.2
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 8.0e-147 524.6 378 73.0
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.4e-146 523.9 458 63.3
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.6e-145 519.6 451 63.6
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 9.8e-145 517.7 418 65.1
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.7e-144 516.9 403 67.0
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 2.8e-144 516.2 445 64.7
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 2.8e-144 516.2 450 62.7
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 6.3e-144 515.0 361 72.0
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 6.3e-144 515.0 381 71.7
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 8.3e-144 514.6 422 66.4
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 8.3e-144 514.6 450 62.2
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 1.8e-143 513.5 472 63.1
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 2.7e-142 509.6 359 74.4
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 5.9e-142 508.4 359 74.1
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.0e-141 507.7 405 64.7
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.3e-141 506.5 460 62.6
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 2.3e-141 506.5 405 64.4
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.1e-140 504.2 409 68.7
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 3.3e-140 502.7 393 69.2
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 5.5e-140 501.9 407 63.1
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 9.5e-140 501.1 479 59.3
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.6e-139 500.4 444 60.1
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 2.8e-139 499.6 456 62.5
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 3.6e-139 499.2 401 63.3
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 1.0e-138 497.7 408 67.4
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 1.4e-138 497.3 455 61.3
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.8e-138 496.9 465 60.6
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 4.0e-138 495.7 404 66.3
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 8.9e-138 494.6 405 66.7
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 8.9e-138 494.6 529 55.0
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 2.0e-137 493.4 413 63.2
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 3.4e-137 492.7 468 60.3
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 4.4e-137 492.3 375 69.6
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.3e-136 490.7 405 63.7
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.3e-136 490.7 444 59.7
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.7e-136 490.3 423 61.9
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 2.2e-136 490.0 364 71.4
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.4e-135 487.3 457 60.0
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.4e-135 487.3 342 72.5
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 2.4e-135 486.5 405 63.2
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 2.4e-135 486.5 374 69.0
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 4.1e-135 485.7 449 60.8
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 2.0e-134 483.4 449 60.6
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 7.8e-134 481.5 352 69.9
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.9e-133 479.6 468 60.7
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 8.0e-131 471.5 361 67.3
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 8.0e-131 471.5 361 67.3
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 2.0e-129 466.8 439 59.7
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 4.4e-129 465.7 395 65.1
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 7.8e-126 454.9 355 67.3
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 5.0e-125 452.2 353 67.7
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 8.6e-125 451.4 404 60.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.5e-124 450.7 333 68.8
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.5e-124 449.9 336 68.5
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 5.6e-124 448.7 460 59.1
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.6e-124 448.7 452 58.8
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 2.1e-123 446.8 303 74.9
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 2.8e-123 446.4 442 59.5
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 8.1e-123 444.9 342 67.0
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 4.7e-115 419.1 337 65.0
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 7.1e-111 405.2 260 80.0
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 6.0e-110 402.1 281 69.4
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 8.6e-109 398.3 408 53.4
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.4e-105 386.3 328 65.2
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.8e-98 364.0 336 62.8
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.4e-95 354.4 302 67.5
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 2.4e-95 353.6 348 52.9
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 4.2e-95 352.8 352 54.5
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 9.6e-92 341.7 250 69.2
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 9.0e-90 335.1 307 57.7
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 2.0e-89 334.0 244 70.5
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 1.2e-86 324.7 296 57.4
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 7.4e-84 315.5 262 62.2
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.8e-82 310.8 205 77.1
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.5e-71 273.9 295 56.6
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 7.2e-71 272.3 283 54.4
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 1.2e-70 271.6 300 50.7
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 2.5e-68 263.8 283 53.7
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.6e-67 261.2 187 70.6
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.8e-66 257.7 346 43.9
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.4e-63 248.1 284 48.9
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 9.4e-63 245.4 210 62.4
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 6.5e-56 222.6 242 54.1
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 1.7e-48 198.0 199 57.3
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.1e-42 177.2 212 53.8
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 6.3e-35 152.9 407 32.2
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 2.5e-31 141.0 121 63.6
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 1.2e-28 132.1 83 75.9
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 2.2e-27 127.9 76 77.6
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.2e-25 122.1 85 74.1
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 8.0e-22 109.4 73 78.1
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.3e-19 102.1 73 74.0
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.7e-19 101.7 86 62.8
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 8.0e-14 82.8 100 48.0
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 5.8e-12 76.6 58 67.2
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.7e-11 75.1 85 56.5


User provided reference genes

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