Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 3.8e-285 984.2 509 100.0
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 9.5e-135 484.6 525 57.1
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 4.6e-97 359.4 603 44.3
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 4.1e-85 319.7 641 40.2
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 7.9e-73 278.9 446 44.2
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.8e-72 275.4 627 35.9
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.6e-71 273.9 627 35.7
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 3.7e-70 270.0 640 35.2
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 6.3e-70 269.2 449 44.3
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 8.2e-70 268.9 633 34.8
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.0e-69 265.8 627 35.7
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.5e-68 264.6 435 42.1
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.5e-68 264.6 635 34.6
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.9e-68 262.7 611 36.2
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 4.2e-66 256.5 472 39.6
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 3.9e-64 250.0 442 40.3
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 6.7e-64 249.2 491 37.5
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.3e-62 245.0 494 39.7
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.0e-59 235.3 504 36.1
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 1.9e-58 231.1 507 36.9
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.4e-56 224.9 450 38.0
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.5e-55 221.5 479 38.4
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-53 214.9 534 34.8
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 7.0e-53 212.6 676 32.1
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 9.1e-53 212.2 460 37.8
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.6e-52 211.5 422 37.2
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.0e-52 211.1 440 37.5
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.0e-51 208.8 472 36.0
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.0e-51 208.8 467 37.7
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.7e-51 208.0 442 38.9
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.7e-51 208.0 438 39.7
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.5e-51 206.1 529 34.4
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 7.2e-50 202.6 448 37.3
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.6e-49 201.4 674 30.9
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.1e-49 201.1 424 36.3
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 6.1e-49 199.5 431 37.1
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 8.0e-49 199.1 472 34.1
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.4e-48 198.4 453 36.2
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.4e-48 198.4 448 35.9
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.8e-48 198.0 471 35.5
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.8e-48 195.7 426 36.2
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 1.5e-47 194.9 459 35.3
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.6e-47 194.1 691 31.3
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-47 194.1 434 36.2
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 4.4e-47 193.4 425 36.2
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 7.5e-47 192.6 474 34.0
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 9.8e-47 192.2 429 36.8
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 9.8e-47 192.2 498 34.7
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 9.8e-47 192.2 484 33.9
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.3e-46 191.8 448 35.3
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 6.3e-46 189.5 631 31.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 8.3e-46 189.1 471 35.5
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.1e-45 187.2 466 35.0
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.2e-44 185.3 482 33.2
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.7e-44 184.1 487 35.1
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 3.5e-44 183.7 442 35.3
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.7e-43 181.4 434 34.1
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.9e-43 180.6 452 34.7
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 6.6e-43 179.5 426 36.6
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 8.6e-43 179.1 582 30.2
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.5e-42 178.3 459 33.6
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 9.5e-42 175.6 455 33.6
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 9.5e-42 175.6 458 34.5
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.2e-41 175.3 436 34.2
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 2.1e-41 174.5 448 34.4
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.8e-41 174.1 441 34.0
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 2.8e-41 174.1 494 33.0
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 4.7e-41 173.3 458 33.4
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.7e-41 173.3 423 34.8
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.1e-41 172.9 460 33.9
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 8.0e-41 172.6 491 32.0
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.0e-40 172.2 451 34.1
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.4e-40 171.8 406 36.5
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 3.0e-40 170.6 451 34.4
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 4.0e-40 170.2 435 33.3
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 4.0e-40 170.2 455 35.2
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 5.2e-40 169.9 453 33.8
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 8.9e-40 169.1 441 33.3
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.2e-39 168.7 432 33.1
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.2e-39 168.7 429 32.6
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.2e-39 168.7 471 32.7
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.0e-39 167.9 436 33.5
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 3.4e-39 167.2 428 32.2
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.4e-39 167.2 170 59.4
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.4e-39 166.8 429 33.6
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 5.7e-39 166.4 441 32.4
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 7.5e-39 166.0 450 31.3
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.2e-38 164.5 442 33.3
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.9e-38 163.3 441 31.3
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 6.3e-38 162.9 447 32.0
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 8.3e-38 162.5 438 32.4
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.1e-37 162.2 428 32.9
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.1e-37 162.2 481 29.5
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.8e-37 161.4 524 31.3
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 4.1e-37 160.2 457 31.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 9.2e-37 159.1 249 41.4
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.6e-36 158.3 432 33.6
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.6e-36 158.3 446 33.0
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.0e-36 157.9 496 31.5
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.5e-36 156.8 429 31.2
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 5.9e-36 156.4 427 32.1
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 5.9e-36 156.4 443 33.4
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 7.8e-36 156.0 427 33.0
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.7e-35 154.8 512 30.3
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 6.6e-35 152.9 118 66.9
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.5e-34 151.0 625 27.4
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.3e-34 150.6 183 50.8
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 4.3e-34 150.2 444 33.8
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 5.6e-34 149.8 429 32.9
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 9.5e-34 149.1 146 58.9
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.6e-33 148.3 431 30.6
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 2.3e-32 144.4 490 31.4
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 3.1e-32 144.1 490 31.4
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 8.9e-32 142.5 427 32.6
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.2e-31 142.1 450 32.4
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.5e-31 141.7 427 31.9
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.5e-31 141.7 429 31.0
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 2.0e-31 141.4 424 31.8
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 3.4e-31 140.6 437 30.9
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 9.8e-31 139.0 118 65.3
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.7e-30 138.3 443 30.5
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.6e-28 131.7 91 76.9
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 4.6e-28 130.2 474 31.6
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.5e-26 125.2 433 29.3
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 5.6e-26 123.2 437 28.4
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.1e-25 121.3 157 49.0
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.1e-25 121.3 157 49.0
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 4.7e-25 120.2 440 28.6
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 6.2e-25 119.8 425 29.9
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 3.1e-24 117.5 533 26.3
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 6.8e-24 116.3 91 65.9
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 9.8e-23 112.5 518 26.8
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.3e-22 112.1 475 27.8
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.7e-22 111.7 437 28.4
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.7e-22 111.7 112 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.4e-21 108.6 450 26.2
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.2e-21 107.5 483 29.0
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 4.6e-20 103.6 90 65.6
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.3e-19 101.3 123 44.7
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 3.3e-18 97.4 422 27.3
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 4.7e-17 93.6 91 54.9
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.0e-16 90.5 159 39.6
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 3.4e-15 87.4 215 29.8
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 4.4e-15 87.0 129 44.2
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 5.8e-15 86.7 506 26.3
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.6e-15 86.3 232 34.5
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.7e-14 85.1 128 39.1
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.2e-13 80.9 91 44.0
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.2e-13 80.9 123 39.0
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 5.4e-13 80.1 57 66.7
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 7.1e-13 79.7 127 38.6
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.6e-12 78.6 120 39.2
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 3.5e-12 77.4 196 34.7
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 7.8e-12 76.3 126 43.7
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 7.8e-12 76.3 111 37.8
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.3e-11 74.7 209 33.0
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.0e-11 74.3 235 32.3
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.9e-10 71.6 56 64.3
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 9.6e-10 69.3 55 56.4
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 9.6e-10 69.3 55 56.4
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.1e-09 68.2 424 25.7
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 4.7e-09 67.0 67 52.2
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.1e-08 65.9 251 30.3
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 2.4e-08 64.7 40 77.5
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 2.4e-08 64.7 94 42.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 3.1e-08 64.3 40 77.5
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 6.8e-08 63.2 67 47.8
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 1.2e-07 62.4 67 46.3
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 4.4e-07 60.5 137 32.8
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 5.8e-07 60.1 61 44.3
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.9e-06 57.8 512 23.6
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 3.8e-06 57.4 87 36.8
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.8e-06 57.4 232 30.2
SHI15484 Sapria himalayana HOM05D000002 ORTHO05D003974 6.4e-06 56.6 49 57.1


User provided reference genes

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