Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 9.8e-86 320.1 160 100.0
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.0e-51 204.5 138 76.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.2e-45 186.0 149 68.5
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 3.6e-40 168.7 153 62.1
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.3e-25 118.6 136 45.6
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.8e-23 113.2 139 43.9
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 7.6e-22 107.8 137 42.3
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 4.9e-21 105.1 131 42.7
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-20 104.0 148 42.6
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.4e-20 103.6 148 43.2
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 4.2e-20 102.1 177 38.4
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 5.5e-20 101.7 141 42.6
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 9.3e-20 100.9 144 41.7
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.2e-19 100.5 142 40.8
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.2e-19 100.5 148 41.2
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.7e-19 99.4 139 39.6
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 3.5e-19 99.0 147 44.2
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.0e-18 97.4 154 41.6
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-18 97.1 150 40.0
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 1.8e-18 96.7 149 40.9
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.8e-18 96.7 104 52.9
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 2.3e-18 96.3 166 35.5
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 2.3e-18 96.3 141 41.8
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 2.3e-18 96.3 141 41.8
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 2.3e-18 96.3 121 43.0
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 3.0e-18 95.9 121 44.6
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 5.1e-18 95.1 136 42.6
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 8.7e-18 94.4 119 45.4
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 8.7e-18 94.4 138 40.6
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.5e-17 93.6 171 38.0
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.5e-17 92.8 133 38.3
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.5e-17 92.8 126 38.9
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.3e-17 92.0 143 39.9
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.3e-16 90.5 167 34.1
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.3e-16 90.5 108 46.3
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.6e-16 90.1 168 34.5
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.6e-16 90.1 170 35.9
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.6e-16 90.1 137 38.7
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.1e-16 89.7 114 39.5
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.7e-16 89.0 159 37.1
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 3.7e-16 89.0 125 41.6
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 3.7e-16 89.0 135 36.3
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 3.7e-16 89.0 130 38.5
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 3.7e-16 89.0 141 41.8
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 4.8e-16 88.6 137 37.2
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 4.8e-16 88.6 154 37.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 4.8e-16 88.6 161 37.9
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 6.2e-16 88.2 153 37.9
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 6.2e-16 88.2 144 38.9
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.2e-16 88.2 167 38.3
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 6.2e-16 88.2 164 38.4
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 8.2e-16 87.8 130 38.5
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-15 87.4 138 39.9
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.4e-15 87.0 199 33.2
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.8e-15 86.7 117 41.9
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.8e-15 86.7 117 41.9
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.8e-15 86.7 106 46.2
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.8e-15 86.7 150 39.3
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.1e-15 85.9 114 45.6
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 3.1e-15 85.9 144 40.3
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.0e-15 85.5 205 31.7
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 6.9e-15 84.7 141 35.5
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 1.2e-14 84.0 161 36.0
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.2e-14 84.0 151 36.4
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.2e-14 84.0 146 39.7
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.2e-14 84.0 116 42.2
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 3.4e-14 82.4 49 59.2
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.4e-14 82.4 49 59.2
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 3.4e-14 82.4 49 59.2
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 3.4e-14 82.4 49 59.2
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 3.4e-14 82.4 164 36.0
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 3.4e-14 82.4 145 36.6
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 4.5e-14 82.0 50 58.0
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 5.8e-14 81.6 49 59.2
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 5.8e-14 81.6 49 59.2
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 5.8e-14 81.6 49 59.2
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 5.8e-14 81.6 49 59.2
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 5.8e-14 81.6 141 37.6
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.6e-14 81.3 156 29.5
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.0e-13 80.9 146 39.7
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.0e-13 80.9 154 29.2
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.0e-13 80.9 154 28.6
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.0e-13 80.9 119 41.2
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.3e-13 80.5 49 55.1
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.3e-13 80.5 49 55.1
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.3e-13 80.5 111 42.3
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 1.3e-13 80.5 49 57.1
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.3e-13 80.5 148 32.4
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.3e-13 80.5 173 33.5
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 1.3e-13 80.5 124 41.1
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.3e-13 80.5 104 40.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.2e-13 79.7 49 55.1
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.2e-13 79.7 49 55.1
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 2.9e-13 79.3 184 28.8
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 3.8e-13 79.0 171 33.3
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 3.8e-13 79.0 125 40.8
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.8e-13 79.0 49 55.1
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.9e-13 78.6 49 55.1
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 6.5e-13 78.2 49 55.1
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 6.5e-13 78.2 49 55.1
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 6.5e-13 78.2 49 55.1
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 6.5e-13 78.2 49 57.1
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 8.4e-13 77.8 48 58.3
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 8.4e-13 77.8 49 57.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.4e-13 77.8 49 57.1
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.4e-13 77.8 140 40.0
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.4e-13 77.8 105 44.8
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 8.4e-13 77.8 105 44.8
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 8.4e-13 77.8 49 55.1
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 8.4e-13 77.8 47 55.3
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.1e-12 77.4 49 51.0
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-12 77.4 135 37.0
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-12 77.4 105 44.8
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.4e-12 77.0 127 32.3
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.4e-12 77.0 47 55.3
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.4e-12 77.0 49 57.1
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.4e-12 77.0 170 31.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 1.9e-12 76.6 139 29.5
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.5e-12 76.3 49 55.1
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 3.2e-12 75.9 114 38.6
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.2e-12 75.9 49 55.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.2e-12 75.9 49 55.1
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.2e-12 75.9 149 29.5
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 3.2e-12 75.9 49 53.1
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 3.2e-12 75.9 49 53.1
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.2e-12 75.5 126 36.5
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 4.2e-12 75.5 181 33.7
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.2e-12 75.5 147 36.1
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.1e-12 74.7 132 34.8
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 7.1e-12 74.7 131 38.2
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 7.1e-12 74.7 47 51.1
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.6e-11 73.6 152 34.9
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.1e-11 73.2 126 35.7
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.1e-11 73.2 47 48.9
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 2.7e-11 72.8 114 42.1
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 3.5e-11 72.4 116 43.1
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 3.5e-11 72.4 49 49.0
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 4.6e-11 72.0 47 46.8
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 4.6e-11 72.0 126 38.9
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 6.1e-11 71.6 163 36.2
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 6.1e-11 71.6 106 40.6
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.3e-10 70.5 137 35.8
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.8e-10 70.1 47 51.1
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.3e-10 69.7 49 55.1
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.0e-10 69.3 150 34.0
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 3.9e-10 68.9 126 36.5
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 3.9e-10 68.9 108 37.0
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 5.1e-10 68.6 113 41.6
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 6.7e-10 68.2 48 45.8
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.1e-09 67.4 45 48.9
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 2.8e-08 62.8 48 45.8
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 5.3e-07 58.5 42 45.2
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.6e-06 56.2 45 40.0


User provided reference genes

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