Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.0e-148 528.5 263 100.0
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 9.7e-83 310.8 247 70.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.2e-72 277.3 246 62.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.2e-66 256.5 277 54.9
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 2.0e-48 196.8 212 52.8
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.0e-48 196.8 234 50.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.7e-47 193.7 247 51.0
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 5.0e-47 192.2 259 46.7
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 8.6e-47 191.4 217 51.6
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.9e-46 190.3 234 49.1
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.3e-46 189.5 261 47.9
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 3.3e-46 189.5 232 50.4
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 9.5e-46 188.0 207 52.2
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.2e-45 187.6 233 48.5
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.4e-44 184.1 215 48.8
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.3e-44 183.3 229 47.6
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 4.0e-44 182.6 186 55.9
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 5.2e-44 182.2 211 51.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 6.8e-44 181.8 232 48.3
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 8.9e-44 181.4 217 49.3
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 8.9e-44 181.4 239 46.0
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 8.9e-44 181.4 263 44.5
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.2e-43 181.0 227 50.7
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 2.0e-43 180.3 265 46.8
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.6e-43 179.9 255 45.5
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.4e-43 179.1 166 59.0
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.9e-43 177.9 187 53.5
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 9.9e-43 177.9 236 47.0
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 9.9e-43 177.9 222 48.2
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.3e-42 177.6 211 48.8
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.3e-42 177.6 204 47.5
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.3e-42 177.6 152 59.2
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.2e-42 176.8 202 51.5
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.2e-42 176.8 230 46.5
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.9e-42 176.4 164 56.7
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.7e-42 176.0 230 46.5
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 4.9e-42 175.6 204 47.1
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 4.9e-42 175.6 161 58.4
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.9e-42 175.6 230 49.1
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.4e-42 175.3 196 50.0
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 6.4e-42 175.3 197 50.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 6.4e-42 175.3 190 50.5
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 8.3e-42 174.9 204 51.0
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 8.3e-42 174.9 162 55.6
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 8.3e-42 174.9 161 58.4
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 8.3e-42 174.9 161 58.4
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.1e-41 174.5 185 51.4
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-41 174.5 222 48.2
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.4e-41 174.1 234 46.6
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.4e-41 174.1 242 46.7
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.4e-41 174.1 224 48.7
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.4e-41 174.1 195 50.3
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.9e-41 173.7 114 73.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.9e-41 173.7 162 55.6
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.4e-41 173.3 245 43.7
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.4e-41 173.3 176 52.8
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 4.1e-41 172.6 126 66.7
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 9.2e-41 171.4 224 46.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.2e-40 171.0 193 49.7
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.6e-40 170.6 176 54.5
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.6e-40 170.6 150 59.3
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.1e-40 170.2 261 44.1
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.1e-40 170.2 261 45.2
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.7e-40 169.9 190 51.1
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.7e-40 169.9 223 47.1
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.6e-40 169.1 162 54.3
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.6e-40 169.1 150 56.7
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 4.6e-40 169.1 150 56.7
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 6.0e-40 168.7 246 42.7
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 6.0e-40 168.7 176 52.8
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 6.0e-40 168.7 219 44.7
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 1.0e-39 167.9 233 45.5
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.7e-39 167.2 228 45.6
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 1.7e-39 167.2 168 54.2
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.7e-39 167.2 197 48.7
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 3.0e-39 166.4 163 54.0
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.9e-39 166.0 249 44.2
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 3.9e-39 166.0 247 45.3
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.9e-39 166.0 158 57.6
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 5.1e-39 165.6 170 57.1
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 5.1e-39 165.6 243 43.6
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 6.6e-39 165.2 170 51.8
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.5e-38 164.1 228 47.8
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.5e-38 164.1 151 55.6
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.5e-38 164.1 210 47.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.9e-38 163.7 139 61.2
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.3e-38 162.5 152 55.9
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.6e-37 160.6 150 55.3
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 6.2e-37 158.7 277 41.2
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 6.2e-37 158.7 161 54.7
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.8e-36 157.1 162 51.9
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.1e-36 156.4 170 49.4
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 4.0e-36 156.0 148 54.1
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 5.2e-36 155.6 123 63.4
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 8.9e-36 154.8 209 43.1
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 8.9e-36 154.8 175 50.9
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 2.0e-35 153.7 180 46.7
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.6e-35 153.3 190 45.3
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 3.4e-35 152.9 199 48.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.8e-35 152.1 153 52.3
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.8e-35 152.1 153 52.3
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.3e-34 151.0 248 39.9
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 2.9e-34 149.8 152 51.3
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.9e-34 149.8 228 44.7
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 2.9e-34 149.8 86 75.6
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.9e-34 149.8 172 48.3
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 8.4e-34 148.3 156 49.4
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-33 147.9 246 40.2
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-32 144.4 162 48.8
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.2e-32 144.4 154 50.6
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.5e-32 142.9 121 56.2
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 6.0e-32 142.1 160 48.8
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.3e-31 141.0 220 41.4
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.7e-31 140.6 101 62.4
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.9e-31 139.4 121 54.5
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 4.7e-29 132.5 218 37.6
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 6.2e-29 132.1 172 44.8
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.1e-28 131.3 150 45.3
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.1e-28 131.3 150 44.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 4.0e-28 129.4 261 37.5
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 5.2e-28 129.0 169 41.4
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 6.9e-28 128.6 150 42.0
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.9e-28 128.6 152 42.8
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.5e-27 127.5 169 41.4
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.6e-27 126.7 175 42.3
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 4.4e-27 125.9 195 41.5
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.3e-26 124.4 153 41.8
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-26 124.0 153 40.5
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.7e-26 124.0 153 40.5
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 4.9e-26 122.5 122 56.6
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 8.4e-26 121.7 153 39.9
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.4e-26 121.7 152 40.1
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 8.4e-26 121.7 153 39.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 8.4e-26 121.7 152 40.1
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-25 120.9 249 32.1
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.4e-25 120.2 152 39.5
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 5.4e-25 119.0 63 81.0
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.6e-24 117.5 150 39.3
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.6e-24 117.5 147 49.0
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.7e-24 116.7 237 33.3
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.6e-24 115.9 168 40.5
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.6e-24 115.9 119 52.9
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.7e-23 114.0 123 50.4
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.6e-23 112.1 152 39.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.1e-22 111.3 65 75.4
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.5e-22 110.2 140 40.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.3e-21 107.8 158 43.0
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 3.6e-21 106.3 250 35.2
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.8e-21 105.9 65 70.8
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 6.2e-21 105.5 63 71.4
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.4e-20 104.4 93 52.7
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.4e-20 103.6 78 67.9
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.4e-20 103.6 78 67.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.1e-20 103.2 148 39.9
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 6.9e-20 102.1 144 38.9
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 3.5e-16 89.7 154 32.5
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.1e-14 84.7 153 30.1
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.8e-12 77.4 91 48.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 4.0e-12 76.3 87 46.0
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.4e-11 73.2 86 46.5
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.6e-08 64.3 98 48.0
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 4.3e-06 56.2 37 67.6
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 7.4e-06 55.5 35 68.6
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 7.4e-06 55.5 35 68.6


User provided reference genes

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