Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 0.0e+00 1087.8 544 100.0
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 5.4e-221 771.2 494 82.0
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.3e-194 681.8 497 74.2
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 2.2e-174 616.3 498 68.9
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 2.7e-167 592.8 500 65.6
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.5e-167 592.4 497 64.4
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 1.7e-166 590.1 497 66.4
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 3.8e-166 589.0 502 63.1
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.6e-164 582.4 497 63.8
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 2.3e-163 579.7 498 64.5
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 2.3e-163 579.7 497 64.6
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 2.0e-162 576.6 497 63.4
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.8e-160 570.1 507 61.5
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.7e-159 566.2 497 64.2
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 3.5e-159 565.8 502 60.6
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 5.9e-159 565.1 498 63.9
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 7.7e-159 564.7 497 62.8
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.7e-158 563.5 497 64.0
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.7e-158 563.5 497 64.0
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 3.6e-156 555.8 497 61.0
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.5e-154 550.4 497 60.4
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 2.6e-154 549.7 497 62.6
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.7e-154 548.5 497 60.2
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 7.5e-154 548.1 497 60.2
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 7.5e-154 548.1 493 62.5
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 9.8e-154 547.7 495 61.0
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.2e-153 546.6 497 60.2
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.7e-153 545.8 498 63.3
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.3e-153 545.0 497 59.8
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.7e-151 539.7 497 60.6
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.5e-151 539.3 497 59.6
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 3.5e-151 539.3 499 60.1
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 5.9e-151 538.5 497 59.4
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 2.3e-150 536.6 497 59.2
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 2.3e-150 536.6 500 61.2
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 2.9e-150 536.2 498 61.6
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.5e-149 533.9 498 61.2
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.3e-149 532.7 493 61.9
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 5.6e-149 531.9 527 58.1
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 4.4e-146 522.3 495 58.8
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 2.9e-145 519.6 500 58.2
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 8.3e-145 518.1 498 60.0
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.3e-142 510.8 502 56.8
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 3.9e-142 509.2 516 59.1
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 6.6e-142 508.4 499 58.5
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 8.6e-142 508.1 498 56.8
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 5.6e-141 505.4 498 57.4
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 3.6e-140 502.7 498 57.2
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.1e-139 501.1 498 56.4
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 4.4e-138 495.7 381 70.3
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 4.4e-138 495.7 512 54.9
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 7.5e-138 495.0 501 56.1
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 2.4e-136 490.0 499 56.5
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.6e-135 487.3 499 56.3
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 6.0e-135 485.3 499 56.1
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 8.6e-134 481.5 505 56.2
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 1.1e-133 481.1 507 53.5
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.9e-133 480.3 499 55.7
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 4.3e-133 479.2 539 54.2
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 5.6e-133 478.8 469 59.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 9.5e-133 478.0 501 55.5
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 3.6e-132 476.1 508 55.7
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 1.8e-131 473.8 507 55.0
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.8e-131 473.8 519 53.0
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.5e-130 470.7 496 55.8
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 4.1e-128 462.6 541 51.0
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.0e-126 458.0 510 52.2
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.3e-126 456.8 496 54.2
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.0e-126 456.4 498 54.2
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 6.6e-126 455.3 502 55.0
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 2.5e-125 453.4 499 53.7
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 3.3e-125 453.0 524 51.1
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 4.3e-125 452.6 389 63.8
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 8.1e-124 448.4 510 53.3
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.0e-123 446.0 510 53.1
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.5e-122 444.1 509 54.6
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 1.7e-121 440.7 508 52.0
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 3.8e-121 439.5 376 63.6
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.2e-120 436.4 508 51.6
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 7.1e-120 435.3 510 53.3
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 7.1e-120 435.3 473 54.3
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.0e-118 431.4 511 52.4
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.3e-118 431.0 498 52.4
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 2.5e-117 426.8 524 51.0
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 9.6e-117 424.9 498 51.2
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 2.8e-116 423.3 566 49.3
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.4e-115 420.2 518 48.3
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 3.1e-115 419.9 496 52.2
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 5.3e-115 419.1 566 48.9
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 2.6e-114 416.8 518 49.0
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 1.3e-113 414.5 553 47.6
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.7e-113 414.1 507 51.3
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 2.2e-113 413.7 508 48.6
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-111 407.9 523 47.6
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 7.8e-111 405.2 556 45.7
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 1.0e-110 404.8 519 48.4
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.3e-109 399.4 343 63.6
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 7.3e-109 398.7 511 52.6
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 4.8e-108 396.0 519 47.8
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 6.2e-108 395.6 273 77.3
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.1e-107 393.3 518 47.1
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 3.2e-104 383.3 515 48.3
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 4.6e-103 379.4 518 47.7
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.0e-102 378.3 502 48.2
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 5.6e-101 372.5 362 58.8
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 6.0e-95 352.4 385 57.4
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.9e-86 323.2 349 55.6
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 8.5e-73 278.9 196 70.9
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-71 275.0 196 69.9
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.0e-70 271.9 255 60.8
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.3e-68 265.0 195 68.7
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 8.2e-68 262.3 268 56.7
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.5e-66 256.9 186 70.4
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.5e-58 229.9 400 39.8
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 8.5e-57 225.7 478 35.4
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.1e-55 221.1 230 53.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.4e-51 208.4 589 33.1
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.0e-45 188.0 369 35.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 4.1e-43 180.3 489 34.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.3e-41 175.3 495 32.1
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.4e-37 160.6 222 44.6
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 7.5e-37 159.5 101 78.2
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 2.2e-36 157.9 243 40.3
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.1e-35 155.6 252 41.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.4e-35 154.5 478 31.4
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 5.4e-35 153.3 124 66.1
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 2.3e-30 137.9 196 41.3
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 7.1e-19 99.8 81 61.7
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 7.1e-19 99.8 169 40.2
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.1e-14 84.3 80 51.2
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 2.7e-10 71.2 41 78.0
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 2.3e-09 68.2 80 47.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 6.6e-09 66.6 91 48.4


User provided reference genes

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