Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 3.5e-86 321.6 166 100.0
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 6.6e-53 211.1 140 82.9
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 6.2e-43 177.9 136 72.8
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 2.1e-38 162.9 129 69.0
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 3.4e-25 119.0 125 58.4
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 5.8e-25 118.2 127 59.1
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 1.0e-24 117.5 134 56.0
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 3.8e-24 115.5 130 58.5
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.2e-23 112.5 118 56.8
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.2e-23 112.5 118 56.8
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 3.2e-23 112.5 118 56.8
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 2.1e-22 109.8 128 55.5
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.1e-22 109.8 138 53.6
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 3.5e-22 109.0 130 59.2
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.0e-21 107.5 126 57.1
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 1.3e-21 107.1 122 55.7
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 5.1e-21 105.1 104 65.4
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 8.7e-21 104.4 129 52.7
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 1.5e-20 103.6 104 63.5
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 2.5e-20 102.8 129 51.9
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 5.7e-20 101.7 135 51.9
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 1.6e-19 100.1 135 50.4
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 2.2e-19 99.8 130 50.8
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 3.7e-19 99.0 124 52.4
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 4.8e-19 98.6 135 53.3
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 4.8e-19 98.6 119 52.9
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 6.3e-19 98.2 127 52.8
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 1.4e-18 97.1 133 51.9
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 4.1e-18 95.5 126 49.2
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 2.6e-17 92.8 115 48.7
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 3.4e-17 92.4 124 55.6
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 4.5e-17 92.0 136 45.6
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 5.9e-17 91.7 103 54.4
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 5.9e-17 91.7 77 66.2
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 7.7e-17 91.3 120 50.8
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 7.7e-17 91.3 128 48.4
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 7.7e-17 91.3 127 48.8
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.0e-16 90.9 138 49.3
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.3e-16 90.5 74 66.2
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 1.7e-16 90.1 98 53.1
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 2.2e-16 89.7 141 46.1
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.2e-16 89.7 79 65.8
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 2.9e-16 89.4 92 58.7
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 2.9e-16 89.4 115 53.9
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 6.5e-16 88.2 79 63.3
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 6.5e-16 88.2 88 60.2
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 8.5e-16 87.8 113 54.0
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 8.5e-16 87.8 131 48.9
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.9e-15 86.7 82 57.3
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 4.2e-15 85.5 123 47.2
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 5.5e-15 85.1 102 50.0
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 7.2e-15 84.7 141 45.4
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 9.4e-15 84.3 140 45.7
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.2e-14 84.0 104 49.0
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 4.6e-14 82.0 122 47.5
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 6.1e-14 81.6 141 46.1
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 6.1e-14 81.6 141 46.1
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 1.0e-13 80.9 136 45.6
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.4e-13 80.5 63 63.5
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 1.8e-13 80.1 104 51.0
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 5.1e-13 78.6 88 51.1
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 5.1e-13 78.6 98 53.1
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 6.7e-13 78.2 80 55.0
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 6.7e-13 78.2 79 58.2
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 1.5e-12 77.0 126 38.1
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 2.5e-12 76.3 141 41.1
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 2.5e-12 76.3 61 67.2
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 3.3e-12 75.9 105 50.5
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 5.7e-12 75.1 111 48.6
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 5.7e-12 75.1 85 51.8
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 7.4e-12 74.7 90 55.6
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 7.4e-12 74.7 92 48.9
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 1.3e-11 73.9 105 51.4
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 1.7e-11 73.6 97 48.5
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 2.8e-11 72.8 51 76.5
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.8e-11 72.8 84 53.6
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 3.7e-11 72.4 68 55.9
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 4.8e-11 72.0 98 49.0
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 1.1e-10 70.9 127 46.5
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 1.4e-10 70.5 77 59.7
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.4e-10 70.5 76 55.3
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 1.4e-10 70.5 76 55.3
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 1.4e-10 70.5 128 39.8
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 1.8e-10 70.1 123 44.7
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 1.8e-10 70.1 81 55.6
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 1.8e-10 70.1 51 66.7
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 5.3e-10 68.6 51 62.7
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 5.3e-10 68.6 73 52.1
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 6.9e-10 68.2 83 53.0
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.1e-10 67.8 81 53.1
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.1e-10 67.8 81 53.1
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 9.1e-10 67.8 59 59.3
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 9.1e-10 67.8 53 67.9
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 1.2e-09 67.4 111 37.8
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.5e-09 67.0 77 51.9
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 2.0e-09 66.6 83 50.6
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 2.0e-09 66.6 83 50.6
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 2.0e-09 66.6 83 50.6
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 2.0e-09 66.6 111 44.1
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 2.6e-09 66.2 79 49.4
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 3.4e-09 65.9 135 37.0
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 3.4e-09 65.9 108 45.4
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 4.5e-09 65.5 126 38.1
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 5.9e-09 65.1 85 49.4
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 5.9e-09 65.1 83 49.4
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 5.9e-09 65.1 116 41.4
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 5.9e-09 65.1 134 39.6
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 7.7e-09 64.7 90 50.0
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 7.7e-09 64.7 81 49.4
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.0e-08 64.3 134 37.3
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 2.9e-08 62.8 89 48.3
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 2.9e-08 62.8 89 48.3
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 2.9e-08 62.8 89 48.3
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 3.8e-08 62.4 74 45.9
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 5.0e-08 62.0 95 46.3
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 6.5e-08 61.6 125 39.2
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 1.4e-07 60.5 90 48.9
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 1.4e-07 60.5 50 60.0
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.4e-07 60.5 55 52.7
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 1.9e-07 60.1 82 47.6
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 1.9e-07 60.1 82 47.6
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 1.9e-07 60.1 99 41.4
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 2.5e-07 59.7 89 47.2
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 2.5e-07 59.7 78 48.7
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.5e-07 58.5 113 34.5
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 5.5e-07 58.5 55 49.1
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 9.4e-07 57.8 89 38.2
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 9.4e-07 57.8 54 46.3
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 9.4e-07 57.8 123 31.7
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 9.4e-07 57.8 93 34.4
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.6e-06 57.0 87 35.6
Gohir.A04G137350 Gossypium hirsutum HOM05D034510 ORTHO05D008112 2.1e-06 56.6 90 44.4
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.1e-06 56.6 55 45.5
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.1e-06 56.6 55 45.5
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 4.7e-06 55.5 54 42.6


User provided reference genes

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