Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0159900 Salix brachista HOM05D003444 ORTHO05D003963 2.1e-36 155.2 79 100.0
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 3.4e-31 137.9 71 97.2
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 6.0e-28 127.1 77 84.4
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 2.5e-26 121.7 83 79.5
Gohir.D07G067700 Gossypium hirsutum HOM05D003444 ORTHO05D003963 3.3e-26 121.3 83 79.5
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 7.3e-26 120.2 83 79.5
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 7.3e-26 120.2 83 78.3
CSS0007457 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 9.6e-26 119.8 83 79.5
CSS0020421 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 9.6e-26 119.8 83 79.5
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 8.1e-25 116.7 83 78.3
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 9.0e-24 113.2 75 82.7
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 3.4e-23 111.3 83 75.9
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 3.4e-23 111.3 83 74.7
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 4.4e-23 110.9 83 71.1
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 5.8e-23 110.5 83 72.3
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 5.8e-23 110.5 83 73.5
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 9.9e-23 109.8 76 77.6
QL10p008640 Quercus lobata HOM05D003444 ORTHO05D003963 9.9e-23 109.8 76 77.6
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.3e-22 109.4 83 71.1
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 2.9e-22 108.2 83 72.3
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 3.8e-22 107.8 78 76.9
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 4.9e-22 107.5 83 72.3
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 8.4e-22 106.7 83 73.5
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.4e-21 105.9 83 69.9
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 1.9e-21 105.5 83 67.5
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 2.4e-21 105.1 78 74.4
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 2.4e-21 105.1 81 67.9
CSS0016754 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 3.2e-21 104.8 76 72.4
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 3.2e-21 104.8 74 74.3
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 3.2e-21 104.8 83 67.5
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 3.2e-21 104.8 80 73.8
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 7.1e-21 103.6 78 73.1
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.2e-20 102.8 76 73.7
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 2.1e-20 102.1 79 68.4
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 6.0e-20 100.5 76 73.7
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 7.8e-20 100.1 80 67.5
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 1.0e-19 99.8 76 72.4
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 1.3e-19 99.4 78 70.5
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 3.0e-19 98.2 83 66.3
FAN13G0471 Fragaria x ananassa HOM05D003444 ORTHO05D003963 5.1e-19 97.4 83 65.1
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 8.7e-19 96.7 83 65.1
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 8.7e-19 96.7 83 65.1
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 8.7e-19 96.7 83 72.3
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 1.1e-18 96.3 83 63.9
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 1.1e-18 96.3 83 63.9
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.9e-18 95.5 78 73.1
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 1.9e-18 95.5 83 66.3
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 2.5e-18 95.1 73 71.2
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 2.5e-18 95.1 77 66.2
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 3.3e-18 94.7 71 71.8
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 5.6e-18 94.0 80 65.0
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 7.3e-18 93.6 76 68.4
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 7.3e-18 93.6 75 69.3
vmacro19323 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 9.6e-18 93.2 73 75.3
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 1.6e-17 92.4 75 69.3
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 1.6e-17 92.4 84 69.0
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 2.1e-17 92.0 79 70.9
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 3.6e-17 91.3 76 65.8
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 4.8e-17 90.9 80 70.0
Cc04_g12580 Coffea canephora HOM05D003444 ORTHO05D003963 4.8e-17 90.9 84 65.5
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 8.1e-17 90.1 84 61.9
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 1.1e-16 89.7 75 65.3
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 1.1e-16 89.7 84 67.9
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 1.1e-16 89.7 84 67.9
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 1.4e-16 89.4 76 61.8
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 1.4e-16 89.4 68 69.1
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 1.8e-16 89.0 75 64.0
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 4.0e-16 87.8 68 69.1
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 5.3e-16 87.4 68 69.1
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 1.5e-15 85.9 68 67.6
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 1.5e-15 85.9 76 65.8
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 2.6e-15 85.1 75 61.3
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 2.6e-15 85.1 85 56.5
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 3.4e-15 84.7 70 65.7
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 3.4e-15 84.7 76 61.8
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 4.5e-15 84.3 75 66.7
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 1.3e-14 82.8 76 64.5
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 3.8e-14 81.3 76 63.2
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 8.4e-14 80.1 75 65.3
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 8.4e-14 80.1 75 65.3
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 8.4e-14 80.1 75 65.3
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.9e-13 79.0 72 63.9
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.9e-13 79.0 72 63.9
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 3.2e-13 78.2 71 66.2
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 5.4e-13 77.4 77 63.6
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 1.6e-12 75.9 76 57.9
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 4.6e-12 74.3 67 58.2
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 4.6e-12 74.3 78 55.1
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 6.0e-12 73.9 74 63.5
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.0e-11 73.2 76 53.9
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 1.8e-11 72.4 61 67.2
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 2.3e-11 72.0 60 65.0
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 8.7e-11 70.1 60 63.3
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 2.5e-10 68.6 84 50.0
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 7.4e-10 67.0 60 65.0
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 7.4e-10 67.0 48 72.9
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 9.6e-10 66.6 85 52.9
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 1.4e-08 62.8 85 51.8
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 1.4e-08 62.8 72 54.2
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 1.4e-08 62.8 72 54.2
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 1.8e-08 62.4 85 52.9
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 2.4e-08 62.0 85 51.8
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 5.3e-08 60.8 64 56.2
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 6.9e-08 60.5 85 49.4
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 2.0e-07 58.9 75 50.7
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 2.6e-07 58.5 85 48.2
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 2.6e-07 58.5 53 60.4
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 2.6e-07 58.5 84 51.2
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 4.5e-07 57.8 72 55.6
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 5.8e-07 57.4 73 53.4
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 1.3e-06 56.2 85 47.1
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 2.2e-06 55.5 78 52.6
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 4.9e-06 54.3 79 50.6
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 4.9e-06 54.3 82 48.8
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 6.4e-06 53.9 85 44.7
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 8.4e-06 53.5 69 53.6


User provided reference genes

Program Settings