Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 3.6e-206 721.5 401 100.0
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 9.4e-170 600.5 394 86.8
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 5.3e-64 249.2 412 40.0
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 7.7e-63 245.4 391 40.2
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 6.1e-60 235.7 463 34.8
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 8.8e-59 231.9 400 38.2
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 5.3e-56 222.6 422 36.7
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 2.0e-55 220.7 392 38.8
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 1.9e-53 214.2 236 50.8
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 4.2e-53 213.0 391 38.4
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 1.0e-51 208.4 400 37.0
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 3.0e-51 206.8 376 37.2
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 1.1e-50 204.9 429 34.3
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 1.1e-48 198.4 360 37.5
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 3.1e-48 196.8 417 35.5
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 1.9e-45 187.6 356 39.0
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 2.5e-45 187.2 344 43.0
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 1.1e-40 171.8 222 44.6
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 2.7e-36 157.1 400 30.5
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 3.4e-34 150.2 355 31.8
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 5.7e-34 149.4 366 32.8
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 1.3e-33 148.3 162 48.1
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 2.2e-33 147.5 398 30.4
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 1.8e-32 144.4 348 31.9
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 2.7e-31 140.6 404 30.0
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 1.0e-30 138.7 228 38.6
Cc08_g11800 Coffea canephora HOM05D008757 ORTHO05D010583 1.3e-30 138.3 325 34.2
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 1.3e-30 138.3 169 44.4
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 2.9e-30 137.1 359 32.3
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 8.6e-30 135.6 417 29.7
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 2.5e-29 134.0 173 42.2
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 4.2e-29 133.3 418 28.5
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 7.2e-29 132.5 374 27.8
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.6e-28 131.3 243 35.4
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.6e-28 131.3 183 40.4
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 3.6e-28 130.2 183 39.9
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.8e-27 127.9 245 35.5
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 3.0e-27 127.1 238 34.5
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 2.4e-24 117.5 175 39.4
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 7.8e-23 112.5 165 39.4
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 4.3e-21 106.7 105 55.2
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 4.0e-19 100.1 131 42.0
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 1.7e-17 94.7 135 37.0
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 4.9e-17 93.2 233 30.9
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 6.4e-17 92.8 137 35.0
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 8.3e-17 92.4 135 35.6
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 1.1e-16 92.0 137 35.8
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.1e-16 92.0 223 26.5
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 1.8e-16 91.3 135 35.6
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 1.2e-15 88.6 131 34.4
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 1.2e-15 88.6 137 34.3
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 2.0e-15 87.8 139 36.0
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 1.3e-14 85.1 135 33.3
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 6.6e-14 82.8 135 31.1
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 6.6e-14 82.8 138 32.6
PGR119G0138 Punica granatum HOM05D008757 ORTHO05D010583 8.9e-11 72.4 349 26.6
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 2.0e-07 61.2 157 27.4
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 6.0e-07 59.7 146 29.5
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 3.9e-06 57.0 150 25.3
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 5.0e-06 56.6 150 24.7


User provided reference genes

Program Settings