Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 0.0e+00 1946.8 1129 100.0
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 0.0e+00 1713.7 1142 90.1
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 0.0e+00 1433.3 1145 79.0
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 7.7e-312 1074.7 1149 55.1
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 5.3e-303 1044.6 1136 55.0
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 1.4e-295 1020.0 1149 54.2
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 1.9e-292 1009.6 1143 55.2
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 2.4e-287 992.6 1146 53.9
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.2e-286 990.3 1134 53.4
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 3.4e-286 988.8 1139 53.2
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 8.8e-282 974.2 1139 52.9
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 2.4e-279 966.1 1138 51.6
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 2.8e-272 942.6 1163 51.2
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 7.7e-270 934.5 1069 53.8
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 2.3e-266 922.9 1143 50.9
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 5.7e-265 918.3 1162 49.8
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 2.2e-264 916.4 1142 54.6
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 1.1e-260 904.0 1154 51.0
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 1.5e-260 903.7 1147 51.2
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 3.7e-256 889.0 1164 48.8
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 7.8e-254 881.3 1192 49.2
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 5.0e-253 878.6 1163 49.0
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 4.0e-250 869.0 1139 53.4
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 2.0e-246 856.7 1170 49.9
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 1.1e-244 850.9 1168 51.4
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 1.8e-242 843.6 1166 50.8
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 7.5e-241 838.2 859 68.6
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 2.2e-240 836.6 1186 50.4
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.6e-238 830.5 1136 51.9
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 3.6e-235 819.3 1160 47.0
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 4.0e-234 815.8 1175 46.4
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 1.3e-232 810.8 1150 46.3
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 7.3e-228 795.0 1204 49.3
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 8.1e-227 791.6 1158 45.6
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 1.1e-226 791.2 1165 45.3
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 2.4e-226 790.0 1162 45.4
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 2.6e-225 786.6 1179 44.6
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 5.8e-225 785.4 1153 46.0
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 4.9e-224 782.3 1160 49.7
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 4.6e-222 775.8 1149 45.9
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 4.4e-217 759.2 1154 48.9
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.2e-214 751.1 833 54.5
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 6.6e-213 745.3 1136 48.9
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 8.7e-213 745.0 1243 42.8
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 1.1e-212 744.6 1110 44.9
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 3.3e-212 743.0 1146 44.6
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 9.6e-212 741.5 1146 44.0
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 8.1e-211 738.4 933 49.8
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 3.8e-208 729.6 1234 42.9
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 5.4e-207 725.7 744 58.6
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 2.7e-206 723.4 1148 44.7
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 1.8e-202 710.7 708 56.8
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 4.0e-202 709.5 1083 44.8
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 9.0e-202 708.4 1159 42.9
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 1.3e-200 704.5 1217 50.3
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 3.2e-199 699.9 1113 52.6
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.5e-198 696.4 1173 42.5
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 3.9e-197 693.0 1229 41.6
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 1.5e-196 691.0 1136 42.3
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 9.6e-196 688.3 930 46.1
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 2.6e-193 680.2 933 46.5
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 1.0e-192 678.3 901 46.5
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 1.0e-192 678.3 888 47.9
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 4.9e-192 676.0 1152 42.7
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 7.1e-191 672.2 964 44.8
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 9.3e-191 671.8 901 46.4
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 2.1e-190 670.6 1141 42.8
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 9.7e-188 661.8 887 46.9
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 2.8e-187 660.2 941 45.2
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 1.1e-186 658.3 953 44.7
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 9.0e-186 655.2 952 44.4
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 9.0e-186 655.2 952 44.4
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.2e-185 654.8 1156 41.8
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 3.4e-185 653.3 932 46.5
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 1.7e-184 651.0 1070 42.1
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 1.7e-184 651.0 1070 42.1
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 3.8e-184 649.8 1156 40.9
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 5.1e-181 639.4 1237 45.0
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 9.7e-180 635.2 1236 44.5
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 1.7e-179 634.4 972 43.8
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 1.7e-179 634.4 1201 39.1
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.8e-178 630.9 893 45.2
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 2.4e-178 630.6 1205 39.8
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 9.1e-178 628.6 1082 42.3
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 2.9e-176 623.6 830 48.4
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 5.0e-176 622.9 905 45.1
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 2.3e-173 614.0 902 45.5
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 2.4e-170 604.0 1156 38.8
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 3.7e-163 580.1 917 41.7
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 5.0e-160 569.7 849 46.3
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 4.0e-157 560.1 769 46.9
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 8.8e-157 558.9 1155 39.3
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.5e-156 558.1 793 46.3
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 3.3e-156 557.0 639 52.1
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 1.6e-150 538.1 890 42.4
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 2.7e-150 537.3 1275 35.5
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 4.5e-145 520.0 939 39.6
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 5.5e-143 513.1 648 48.8
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 2.4e-130 471.1 1062 36.4
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 7.8e-129 466.1 818 41.2
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.2e-123 448.0 484 53.7
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.3e-119 433.7 719 43.0
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 1.1e-117 429.1 622 43.2
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 6.0e-105 386.7 913 34.7
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 3.9e-104 384.0 533 44.7
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.7e-86 324.3 376 52.9
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 6.5e-83 313.5 388 47.2
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 8.2e-78 296.6 362 62.2
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.6e-76 291.6 367 51.2
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 1.2e-68 266.2 391 42.2
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 9.4e-66 256.5 465 40.9
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 8.2e-62 243.4 532 38.2
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 4.1e-61 241.1 184 66.8
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 9.1e-61 240.0 478 40.4
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 3.1e-53 214.9 164 72.0
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.2e-43 182.2 184 59.2
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 1.4e-37 162.9 228 47.4
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 3.1e-37 161.8 585 28.7
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 1.1e-29 136.7 397 28.5
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.0e-27 130.2 174 45.4
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 8.0e-25 120.6 237 35.4
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 5.4e-21 107.8 95 57.9
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.7e-20 105.5 76 72.4
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.5e-18 99.0 86 58.1
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 3.3e-18 98.6 64 71.9
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.2e-17 96.7 93 62.4
arahy.Tifrunner.gnm1.ann1.6G1AZV Arachis hypogaea HOM05D002567 ORTHO05D006538 8.0e-17 94.0 326 31.6
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.3e-14 86.7 53 79.2
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 9.2e-13 80.5 319 22.9
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 2.0e-12 79.3 525 23.0
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 1.0e-11 77.0 77 51.9
Actinidia00674 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.3e-10 72.0 370 30.5
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 4.3e-10 71.6 82 43.9
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 9.5e-10 70.5 224 29.0
MBI19_g13121_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.2e-09 70.1 247 31.6
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.1e-09 69.3 212 30.2
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 2.8e-09 68.9 251 29.1
BolC8t49614H Brassica oleracea HOM05D002848 ORTHO05D003043 8.1e-09 67.4 216 31.9
BcaC07g39005 Brassica carinata HOM05D002848 ORTHO05D003043 1.4e-08 66.6 216 31.9
C08p19770 Brassica napus HOM05D002848 ORTHO05D003043 1.4e-08 66.6 216 31.9
BcaB03g12895 Brassica carinata HOM05D002848 ORTHO05D003043 3.1e-08 65.5 256 30.9
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 5.2e-08 64.7 226 29.2
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 6.8e-08 64.3 93 37.6
Sed0026959 Sechium edule HOM05D002848 ORTHO05D003043 6.8e-08 64.3 193 31.6
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 8.9e-08 63.9 240 28.8
A08p29640 Brassica napus HOM05D002848 ORTHO05D003043 1.5e-07 63.2 216 30.6
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.5e-07 63.2 63 49.2
Actinidia32250 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.0e-07 62.8 172 33.7
BraA08t34900Z Brassica rapa HOM05D002848 ORTHO05D003043 2.0e-07 62.8 215 30.7
CsaV3_2G029390 Cucumis sativus L. HOM05D002848 ORTHO05D003043 2.0e-07 62.8 189 28.6
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 2.6e-07 62.4 191 28.8
RcHm_v2.0_Chr2g0170231 Rosa chinensis HOM05D002567 ORTHO05D006538 2.6e-07 62.4 52 55.8
Thecc.01G021000 Theobroma cacao HOM05D002848 ORTHO05D003043 3.4e-07 62.0 224 26.3
Mapoly0111s0041 Marchantia polymorpha HOM05D002848 ORTHO05D003043 4.4e-07 61.6 91 35.2
Ca_19632_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 5.8e-07 61.2 178 31.5
Sp1g17660 Schrenkiella parvula HOM05D002848 ORTHO05D003043 5.8e-07 61.2 217 29.0
CARHR020360 Cardamine hirsuta HOM05D002848 ORTHO05D003043 7.5e-07 60.8 225 29.3
Haze_03792 Corylus avellana HOM05D002848 ORTHO05D003043 7.5e-07 60.8 215 27.9
AL1G32590 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 9.8e-07 60.5 256 27.3
Aqoxy6G02321 Aquilegia oxysepala HOM05D002848 ORTHO05D003043 1.3e-06 60.1 288 27.8
AT1G19860 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 1.7e-06 59.7 224 27.7
COL.COLO4_21931 Corchorus olitorius HOM05D002848 ORTHO05D003043 1.7e-06 59.7 414 24.6
Gohir.D02G097800 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.7e-06 59.7 210 28.6
Gorai.005G111400 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.7e-06 59.7 210 28.6
CSS0049415 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 2.2e-06 59.3 128 34.4
Gohir.A01G112600 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.2e-06 59.3 187 28.9
Nitab4.5_0005721g0090 Nicotiana tabacum HOM05D002848 ORTHO05D003043 2.2e-06 59.3 141 32.6
Solyc09g074700.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.2e-06 59.3 54 57.4
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 2.9e-06 58.9 82 40.2
Cfa006959 Carpinus fangiana HOM05D002848 ORTHO05D003043 2.9e-06 58.9 191 30.9
Gohir.A02G088501 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.9e-06 58.9 210 28.6
CAN.G1671.1 Capsicum annuum HOM05D002848 ORTHO05D003043 3.7e-06 58.5 122 35.2
Sabra07G0010500 Salix brachista HOM05D002848 ORTHO05D003043 3.7e-06 58.5 246 26.8
Solyc02g084200.3 Solanum lycopersicum HOM05D002848 ORTHO05D003043 4.9e-06 58.2 95 36.8
PGSC0003DMG400003555 Solanum tuberosum HOM05D002848 ORTHO05D030274 4.9e-06 58.2 90 37.8
Carub.0001s1938 Capsella rubella HOM05D002848 ORTHO05D003043 6.4e-06 57.8 312 24.4
Duzib187G1527 Durio zibethinus HOM05D002848 ORTHO05D003043 6.4e-06 57.8 94 38.3
Nitab4.5_0000577g0100 Nicotiana tabacum HOM05D002848 ORTHO05D003043 6.4e-06 57.8 210 29.5
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 6.4e-06 57.8 264 25.0
BcaB07g32004 Brassica carinata HOM05D002848 ORTHO05D003043 8.3e-06 57.4 218 29.4
Lj1g0005660 Lotus japonicus HOM05D002848 ORTHO05D003043 8.3e-06 57.4 161 32.3
Nitab4.5_0000192g0040 Nicotiana tabacum HOM05D002848 ORTHO05D003043 8.3e-06 57.4 248 27.4
VMungo0251G2011 Vigna mungo HOM05D002848 ORTHO05D003043 8.3e-06 57.4 92 40.2


User provided reference genes

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