Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 4.2e-130 468.0 231 100.0
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.2e-122 441.4 232 94.4
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.3e-99 366.7 234 77.8
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 2.2e-99 365.9 234 79.5
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 3.8e-99 365.2 233 79.0
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 6.5e-99 364.4 233 77.7
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.9e-98 362.8 226 77.0
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.9e-98 362.8 226 77.0
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 4.2e-98 361.7 233 77.3
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.6e-97 359.8 232 76.3
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.6e-97 359.8 235 77.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.1e-97 359.4 234 76.5
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.1e-97 359.4 235 77.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 8.0e-97 357.5 235 77.0
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.8e-96 356.3 232 75.0
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.8e-96 356.3 234 76.1
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 4.0e-96 355.1 233 77.3
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 4.0e-96 355.1 233 76.4
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 4.0e-96 355.1 231 76.2
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.0e-96 355.1 234 75.6
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 5.2e-96 354.8 226 75.2
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.7e-96 354.4 234 76.1
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.8e-96 354.0 233 76.4
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.5e-95 353.2 226 76.1
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.0e-95 352.8 233 76.4
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.6e-95 352.4 232 73.3
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 3.3e-95 352.1 232 77.2
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.4e-95 351.7 233 76.0
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 9.7e-95 350.5 232 75.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.7e-94 349.7 234 75.2
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.2e-94 349.4 233 71.7
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.8e-94 349.0 226 73.5
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 3.7e-94 348.6 225 72.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 3.7e-94 348.6 226 74.3
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.7e-94 348.6 226 74.8
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.1e-93 347.1 226 73.9
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.8e-93 346.3 234 73.5
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.4e-93 345.9 233 72.1
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.4e-93 345.9 234 74.8
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 9.1e-93 344.0 225 76.4
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 9.1e-93 344.0 226 72.6
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.6e-92 343.2 249 72.7
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.6e-92 343.2 226 73.5
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.0e-92 342.8 225 76.0
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.7e-92 342.4 233 74.2
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.7e-92 342.4 232 72.0
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.5e-92 341.7 250 71.6
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.3e-91 340.1 226 73.9
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.3e-91 340.1 227 71.8
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.3e-91 340.1 221 74.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.7e-91 339.7 238 72.7
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.2e-91 339.3 235 74.5
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.2e-91 339.3 229 73.4
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.9e-91 339.0 237 71.3
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.8e-91 338.6 226 72.1
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.1e-90 337.0 240 70.0
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.1e-90 337.0 236 72.0
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.5e-90 336.7 256 68.4
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.5e-90 336.7 226 73.0
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-90 335.9 248 69.4
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.5e-90 334.7 227 72.7
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 7.2e-90 334.3 224 75.4
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 7.2e-90 334.3 224 75.4
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.2e-89 333.6 237 70.5
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.6e-89 333.2 225 73.3
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.1e-89 332.8 227 71.8
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.7e-89 332.4 227 71.4
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.7e-89 332.4 227 71.8
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.7e-89 332.4 226 71.2
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 8.0e-89 330.9 226 71.2
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 8.0e-89 330.9 226 70.8
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.8e-88 327.4 227 70.5
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 8.8e-88 327.4 228 71.1
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 8.8e-88 327.4 208 75.0
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 2.6e-87 325.9 232 70.7
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.4e-87 325.5 213 74.6
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 7.5e-87 324.3 253 64.4
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-86 323.6 208 77.4
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.8e-86 322.4 230 70.0
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.8e-86 322.4 230 70.0
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.8e-86 322.4 234 68.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 3.7e-86 322.0 234 68.4
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.7e-86 322.0 208 74.0
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 3.7e-86 322.0 230 68.7
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 8.3e-86 320.9 233 67.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.8e-85 319.7 234 67.9
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.8e-85 319.7 233 68.2
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.4e-85 319.3 209 74.6
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.1e-85 318.9 225 70.2
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 3.1e-85 318.9 233 67.4
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.4e-85 318.2 233 67.4
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 5.4e-85 318.2 221 70.1
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.2e-84 317.0 231 70.1
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.2e-84 317.0 221 69.2
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.6e-84 316.6 233 71.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.5e-84 315.5 219 70.8
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 4.5e-84 315.1 218 71.1
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.5e-84 315.1 235 68.1
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 5.9e-84 314.7 212 71.2
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.3e-83 313.5 209 73.2
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.7e-83 313.2 206 71.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.3e-83 312.8 234 64.1
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 2.9e-83 312.4 235 67.7
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.9e-83 312.4 226 68.6
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 5.0e-83 311.6 209 71.3
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 6.5e-83 311.2 235 67.2
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 6.5e-83 311.2 235 67.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 6.5e-83 311.2 235 65.5
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 8.6e-83 310.8 235 65.5
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.9e-82 309.7 235 67.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.9e-82 309.7 224 70.1
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.9e-82 309.7 210 70.5
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 4.2e-82 308.5 210 71.9
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 7.2e-82 307.8 212 70.8
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.8e-80 303.1 237 67.1
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 5.2e-80 301.6 226 66.8
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.3e-78 297.0 213 69.0
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 4.9e-78 295.0 242 62.4
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.3e-78 294.7 229 65.5
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.0e-75 287.3 243 61.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.3e-75 287.0 230 64.8
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.6e-73 278.9 178 73.6
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.4e-72 276.9 207 70.0
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 4.0e-72 275.4 181 75.7
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.5e-71 271.2 225 64.9
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.4e-69 266.2 237 61.6
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.9e-66 256.5 233 60.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.1e-65 253.1 212 60.4
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.7e-62 243.4 223 53.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.4e-62 241.5 221 58.8
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.4e-61 239.6 157 72.6
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.2e-60 237.3 161 73.3
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.6e-59 231.1 194 64.4
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 6.2e-57 224.9 156 69.9
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.1e-53 214.2 170 65.3
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.5e-50 203.8 184 59.2
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.5e-50 203.8 211 50.7
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 9.5e-50 201.1 211 50.2
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.8e-49 199.5 145 71.7
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.4e-45 187.2 234 46.2
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.2e-45 185.7 120 73.3
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 5.4e-45 185.3 234 45.7
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.6e-44 183.7 165 56.4
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.5e-39 167.2 132 59.8
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.2e-37 159.1 196 44.4
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-35 154.1 156 53.2
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 3.3e-34 149.4 90 78.9
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 9.6e-34 147.9 99 69.7
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 2.4e-32 143.3 92 75.0
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.7e-30 137.1 152 49.3
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.9e-26 123.6 228 36.8
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 9.6e-26 121.3 103 60.2
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 8.4e-22 108.2 201 30.3
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.9e-21 107.1 89 58.4
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.9e-21 107.1 94 62.8
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.0e-20 102.1 66 72.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.0e-19 99.8 75 72.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-19 99.0 75 72.0
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-18 97.1 74 70.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.4e-18 95.1 74 68.9
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.9e-16 88.6 70 65.7
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 6.9e-16 88.6 70 64.3
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 1.5e-15 87.4 232 29.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.5e-14 82.0 52 76.9
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.4e-13 80.9 122 37.7
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 7.4e-10 68.6 158 32.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.8e-09 66.6 49 73.5
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 9.0e-08 61.6 54 68.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 2.0e-07 60.5 40 67.5
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 2.9e-06 56.6 38 63.2
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 8.5e-06 55.1 30 83.3


User provided reference genes

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