Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 9.7e-20 99.8 75 100.0
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 2.1e-14 82.0 77 71.4
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 2.6e-12 75.1 72 59.7
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 4.4e-12 74.3 72 58.3
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 5.7e-12 73.9 75 54.7
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.7e-11 72.4 38 92.1
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.7e-11 72.4 38 92.1
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.7e-11 72.4 38 92.1
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.7e-11 72.4 38 92.1
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.7e-11 72.4 38 92.1
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 3.7e-11 71.2 79 64.6
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 4.8e-11 70.9 38 89.5
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 6.3e-11 70.5 38 89.5
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.3e-11 70.5 38 89.5
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 8.3e-11 70.1 72 56.9
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.3e-11 70.1 37 91.9
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.3e-11 70.1 37 91.9
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 8.3e-11 70.1 38 89.5
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 8.3e-11 70.1 38 89.5
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 8.3e-11 70.1 38 89.5
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 8.3e-11 70.1 38 89.5
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.1e-10 69.7 37 89.2
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 1.1e-10 69.7 36 91.7
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.1e-10 69.7 38 89.5
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.1e-10 69.7 38 89.5
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.1e-10 69.7 38 89.5
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 1.1e-10 69.7 36 91.7
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 1.4e-10 69.3 72 55.6
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 1.4e-10 69.3 37 86.5
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 1.4e-10 69.3 75 54.7
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.8e-10 68.9 37 89.2
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 1.8e-10 68.9 38 84.2
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.8e-10 68.9 38 86.8
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.4e-10 68.6 38 86.8
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 2.4e-10 68.6 38 84.2
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 2.4e-10 68.6 38 84.2
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 2.4e-10 68.6 37 89.2
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 3.1e-10 68.2 37 89.2
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.1e-10 68.2 38 84.2
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 3.1e-10 68.2 37 89.2
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 4.1e-10 67.8 39 89.7
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 4.1e-10 67.8 37 89.2
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 4.1e-10 67.8 38 86.8
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 4.1e-10 67.8 71 62.0
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.1e-10 67.8 38 84.2
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.1e-10 67.8 38 84.2
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 4.1e-10 67.8 38 84.2
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 4.1e-10 67.8 39 89.7
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.3e-10 67.4 38 84.2
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 7.0e-10 67.0 37 89.2
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 9.1e-10 66.6 39 89.7
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 9.1e-10 66.6 37 83.8
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 9.1e-10 66.6 38 81.6
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 9.1e-10 66.6 38 81.6
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.2e-09 66.2 78 62.8
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 1.6e-09 65.9 39 87.2
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 1.6e-09 65.9 36 86.1
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 1.6e-09 65.9 78 62.8
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 1.6e-09 65.9 37 89.2
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 1.6e-09 65.9 36 83.3
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 2.0e-09 65.5 39 84.6
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 2.0e-09 65.5 39 87.2
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 2.7e-09 65.1 40 85.0
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 2.7e-09 65.1 68 50.0
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 2.7e-09 65.1 39 87.2
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.7e-09 65.1 38 84.2
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.7e-09 65.1 37 81.1
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 3.5e-09 64.7 39 84.6
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 3.5e-09 64.7 38 81.6
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.5e-09 64.7 38 81.6
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 3.5e-09 64.7 38 78.9
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 3.5e-09 64.7 38 84.2
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 4.5e-09 64.3 39 84.6
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 4.5e-09 64.3 39 84.6
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 4.5e-09 64.3 39 84.6
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 5.9e-09 63.9 66 48.5
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 5.9e-09 63.9 37 83.8
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 7.7e-09 63.5 38 84.2
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 7.7e-09 63.5 66 48.5
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 7.7e-09 63.5 37 81.1
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 7.7e-09 63.5 34 88.2
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 1.0e-08 63.2 36 83.3
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.0e-08 63.2 39 82.1
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 1.0e-08 63.2 39 84.6
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 1.3e-08 62.8 34 85.3
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 1.3e-08 62.8 34 85.3
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 84.6
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 1.3e-08 62.8 38 81.6
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.3e-08 62.8 37 83.8
Manes.01G249100 Manihot esculenta HOM05D001384 ORTHO05D001215 1.3e-08 62.8 38 86.8
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.3e-08 62.8 39 82.1
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.7e-08 62.4 37 81.1
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 1.7e-08 62.4 39 82.1
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 2.2e-08 62.0 36 83.3
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 2.2e-08 62.0 33 87.9
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 2.9e-08 61.6 37 83.8
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 3.8e-08 61.2 35 82.9
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 3.8e-08 61.2 35 80.0
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 3.8e-08 61.2 35 80.0
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 3.8e-08 61.2 33 87.9
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 3.8e-08 61.2 38 76.3
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 3.8e-08 61.2 74 50.0
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 3.8e-08 61.2 39 79.5
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 5.0e-08 60.8 75 61.3
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 6.5e-08 60.5 34 82.4
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 6.5e-08 60.5 38 84.2
arahy.Tifrunner.gnm1.ann1.JZQU6N Arachis hypogaea HOM05D001384 ORTHO05D001215 1.1e-07 59.7 35 80.0
arahy.Tifrunner.gnm1.ann1.XBFI6K Arachis hypogaea HOM05D001384 ORTHO05D001215 1.1e-07 59.7 35 80.0
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 1.1e-07 59.7 34 79.4
SEGI_03889 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 1.1e-07 59.7 75 46.7
SEGI_03997 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 1.1e-07 59.7 75 46.7
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 1.5e-07 59.3 38 81.6
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.5e-07 59.3 33 84.8
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.5e-07 59.3 76 60.5
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.9e-07 58.9 38 81.6
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 2.5e-07 58.5 38 81.6
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 3.2e-07 58.2 36 75.0
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 4.2e-07 57.8 35 80.0
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 9.4e-07 56.6 38 78.9
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 9.4e-07 56.6 33 81.8
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.2e-06 56.2 38 76.3
unitig_62.g23800 Utricularia gibba HOM05D001384 ORTHO05D001215 1.2e-06 56.2 38 68.4
ECA236G1259 Erigeron canadensis HOM05D001384 ORTHO05D001215 1.6e-06 55.8 38 71.1
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 2.1e-06 55.5 30 90.0
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 2.1e-06 55.5 37 78.4
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 2.7e-06 55.1 31 87.1
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 3.6e-06 54.7 33 78.8
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 3.6e-06 54.7 33 78.8
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 3.6e-06 54.7 32 81.2
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 3.6e-06 54.7 33 78.8
Lj1g0002747 Lotus japonicus HOM05D001384 ORTHO05D001215 4.7e-06 54.3 34 76.5
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 6.1e-06 53.9 32 81.2
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 8.0e-06 53.5 67 47.8


User provided reference genes

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