Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 1.4e-30 135.6 68 100.0
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 8.0e-29 129.8 68 95.6
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 4.2e-22 107.5 66 80.3
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 9.4e-22 106.3 68 79.4
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 9.4e-22 106.3 68 79.4
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.2e-21 105.9 68 77.9
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 1.2e-21 105.9 66 80.3
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 1.2e-21 105.9 66 80.3
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 1.2e-21 105.9 66 80.3
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 1.2e-21 105.9 66 80.3
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 1.2e-21 105.9 66 80.3
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 1.2e-21 105.9 66 80.3
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 2.7e-21 104.8 68 73.5
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 3.6e-21 104.4 65 80.0
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 4.7e-21 104.0 68 73.5
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 6.1e-21 103.6 68 75.0
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 8.0e-21 103.2 68 76.5
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.0e-20 102.8 66 75.8
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 1.4e-20 102.4 68 75.0
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 1.4e-20 102.4 65 78.5
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 1.4e-20 102.4 65 78.5
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.8e-20 102.1 66 77.3
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 2.3e-20 101.7 68 75.0
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 2.3e-20 101.7 68 75.0
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.3e-20 101.7 68 72.1
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.3e-20 101.7 68 76.5
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 2.3e-20 101.7 66 74.2
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 3.0e-20 101.3 65 78.5
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 4.0e-20 100.9 68 75.0
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.0e-20 100.9 66 74.2
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 4.0e-20 100.9 66 72.7
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 5.2e-20 100.5 68 75.0
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 6.8e-20 100.1 65 73.8
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 6.8e-20 100.1 68 73.5
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 8.8e-20 99.8 63 77.8
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.2e-19 99.4 66 74.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 1.5e-19 99.0 68 75.0
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 1.5e-19 99.0 65 75.4
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 2.0e-19 98.6 65 75.4
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.0e-19 98.6 68 72.1
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.0e-19 98.6 68 72.1
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 2.6e-19 98.2 66 72.7
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 2.6e-19 98.2 65 75.4
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 2.6e-19 98.2 68 70.6
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 3.4e-19 97.8 68 75.0
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 5.7e-19 97.1 66 75.8
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 7.5e-19 96.7 68 75.0
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 7.5e-19 96.7 68 75.0
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 9.7e-19 96.3 68 73.5
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 9.7e-19 96.3 68 69.1
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 1.3e-18 95.9 68 70.6
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 2.2e-18 95.1 65 72.3
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 2.2e-18 95.1 65 72.3
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 3.7e-18 94.4 68 72.1
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.7e-18 94.4 68 67.6
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 4.8e-18 94.0 65 70.8
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 6.3e-18 93.6 66 69.7
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 1.1e-17 92.8 63 73.0
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 1.4e-17 92.4 66 66.7
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 2.4e-17 91.7 57 82.5
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 3.1e-17 91.3 66 66.7
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 4.1e-17 90.9 68 69.1
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 4.1e-17 90.9 65 70.8
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 4.1e-17 90.9 57 84.2
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 4.1e-17 90.9 59 72.9
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 5.3e-17 90.5 68 67.6
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 1.2e-16 89.4 62 74.2
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.2e-16 89.4 65 66.2
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.2e-16 89.4 65 66.2
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 1.2e-16 89.4 57 77.2
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 1.6e-16 89.0 57 77.2
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 1.6e-16 89.0 58 75.9
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 1.6e-16 89.0 65 66.2
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 2.0e-16 88.6 56 80.4
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 2.0e-16 88.6 63 71.4
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 2.0e-16 88.6 65 64.6
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 2.0e-16 88.6 65 66.2
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 2.7e-16 88.2 60 75.0
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 3.5e-16 87.8 59 74.6
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 4.5e-16 87.4 65 64.6
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 5.9e-16 87.0 65 66.2
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 7.7e-16 86.7 59 72.9
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 1.0e-15 86.3 60 66.7
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 1.0e-15 86.3 65 67.7
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 2.2e-15 85.1 83 55.4
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 2.9e-15 84.7 66 68.2
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.9e-15 84.7 66 63.6
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 6.5e-15 83.6 56 75.0
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 6.5e-15 83.6 116 46.6
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 8.5e-15 83.2 57 70.2
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 8.5e-15 83.2 65 64.6
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 1.1e-14 82.8 58 69.0
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.9e-14 82.0 62 66.1
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 4.2e-14 80.9 57 68.4
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 2.1e-13 78.6 60 66.7
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 2.7e-13 78.2 42 90.5
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 2.7e-13 78.2 84 53.6
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 4.7e-13 77.4 65 60.0
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 8.0e-13 76.6 56 67.9
Potri.014G100250 Populus trichocarpa HOM05D007265 ORTHO05D009118 8.0e-13 76.6 42 85.7
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 1.0e-12 76.3 59 66.1
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.8e-12 75.5 48 77.1
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 2.3e-12 75.1 54 68.5
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 3.4e-11 71.2 48 72.9
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 1.0e-07 59.7 65 49.2
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.0e-07 59.7 39 74.4
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 1.3e-07 59.3 41 73.2
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 2.3e-07 58.5 39 71.8
Mapoly0142s0011 Marchantia polymorpha HOM05D059347 ORTHO05D043981 1.9e-06 55.5 59 45.8
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 2.5e-06 55.1 45 68.9


User provided reference genes

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