Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 2503.4 1250 100.0
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 2024.6 1253 84.4
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1907.5 1254 79.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1902.5 1264 78.2
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1819.3 1247 76.1
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1792.7 1248 74.9
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1789.6 1247 73.9
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1771.9 1257 73.3
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1771.1 1257 73.6
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1766.9 1248 73.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1765.7 1255 73.4
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1763.0 1255 73.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1758.8 1247 73.5
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1755.0 1255 72.7
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1751.1 1255 72.9
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1748.8 1248 72.8
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1748.4 1254 73.4
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1746.5 1248 72.4
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1742.2 1255 72.4
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1738.0 1248 72.8
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1736.9 1251 72.3
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1734.2 1225 73.8
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1728.4 1262 71.7
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1723.0 1248 71.5
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1720.7 1247 71.9
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1718.4 1255 71.6
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1717.2 1249 71.6
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1716.8 1247 71.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1248 72.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1262 71.4
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1255 71.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1704.1 1251 70.9
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1703.0 1249 70.9
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1702.6 1255 70.3
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1696.4 1251 71.5
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1695.6 1248 71.6
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1694.5 1255 70.4
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1694.5 1249 70.8
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1692.2 1259 70.0
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1689.9 1247 70.1
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1685.6 1257 70.2
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1683.3 1259 69.6
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1676.8 1248 70.8
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1674.4 1251 69.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1674.4 1281 69.0
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1670.6 1247 69.4
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1668.7 1252 69.7
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1667.1 1253 69.6
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1665.2 1253 70.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1661.0 1249 68.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1653.3 1244 68.6
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1651.3 1256 69.4
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1651.3 1249 69.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1650.2 1207 71.8
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1649.4 1251 68.6
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1648.3 1254 68.6
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1647.9 1299 67.1
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1636.3 1245 67.9
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1634.4 1246 69.7
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1632.5 1197 71.0
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1631.3 1247 68.7
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1630.5 1249 68.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1622.1 1165 72.3
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1620.9 1319 65.3
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1617.8 1285 66.6
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1612.8 1251 67.0
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1604.7 1209 69.2
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1595.1 1245 66.8
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1592.4 1248 66.7
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1591.6 1407 62.7
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1584.3 1247 66.0
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1579.3 1248 67.2
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1577.0 1245 66.2
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1570.1 1255 67.0
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1560.8 1249 65.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1559.7 1245 65.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1559.7 1245 65.6
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1552.3 1248 65.4
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1550.8 1248 65.3
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1548.1 1246 65.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1543.9 1274 65.7
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1530.4 1248 64.7
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1530.4 1248 64.7
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1527.3 1293 64.4
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1500.7 1254 64.1
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1492.2 1269 62.0
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1483.8 1275 62.2
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1478.4 1080 71.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1453.7 1271 62.1
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1434.1 1245 62.1
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1421.4 1250 60.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1420.2 1250 59.9
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1411.0 1250 59.5
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1377.1 1235 60.8
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1319.3 971 71.3
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1319.3 993 69.1
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1311.2 967 71.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1306.2 1104 64.4
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1259.2 982 66.3
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1219.1 826 75.3
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1202.6 888 68.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1170.2 929 65.8
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1090.9 809 71.3
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 9.7e-298 1027.3 1270 45.1
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 2.4e-296 1022.7 1619 41.3
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 8.3e-273 944.5 1256 44.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.3e-265 917.9 1280 42.7
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.5e-253 879.8 700 63.9
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.7e-252 875.5 1278 40.3
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.8e-251 873.6 731 64.0
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-237 827.8 768 57.3
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.4e-234 816.2 622 70.4
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 4.7e-228 795.8 1519 33.6
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.6e-226 788.5 618 68.9
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 5.1e-190 669.5 482 70.5
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 2.2e-180 637.5 587 59.1
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.0e-174 617.1 620 51.5
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.1e-173 615.1 530 63.8
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 1.5e-173 614.8 465 65.8
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.2e-151 542.0 451 64.5
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 8.3e-132 476.1 344 70.6
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 3.0e-113 414.5 403 59.3
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 6.4e-108 396.7 446 56.1
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 7.9e-90 336.7 1050 28.0
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 9.7e-80 303.1 179 80.4
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.1e-78 297.7 273 63.0
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 9.1e-70 270.0 1438 21.8
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.6e-69 268.5 198 74.7
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 2.2e-68 265.4 913 27.1
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.6e-66 259.2 195 65.1
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 5.9e-61 240.7 187 64.7
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.0e-60 240.0 207 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.8e-60 238.0 384 39.8
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.3e-57 228.8 295 47.8
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 4.4e-56 224.6 327 38.5
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.5e-53 214.9 212 57.1
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 8.0e-50 203.8 216 58.3
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 9.7e-48 196.8 216 56.0
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.8e-47 195.3 247 45.3
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.6e-40 172.2 426 35.7
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.6e-37 162.9 169 52.1
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.3e-36 159.1 613 29.0
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.5e-32 146.4 207 45.4
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 7.0e-30 137.5 81 82.7
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.7e-28 132.9 82 78.0
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.6e-27 127.9 83 75.9
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 8.9e-25 120.6 138 54.3
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.0e-24 119.4 86 64.0
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 3.2e-22 112.1 64 82.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 4.6e-21 108.2 710 21.3
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.3e-20 105.9 74 68.9
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.2e-18 100.1 75 70.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.7e-15 89.7 60 71.7
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 3.7e-15 88.6 111 48.6
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.9e-15 88.2 68 63.2
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 8.3e-15 87.4 69 63.8
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 5.4e-14 84.7 59 74.6
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 5.4e-14 84.7 126 42.1
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-13 83.6 81 58.0
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.6e-13 83.2 44 81.8
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.0e-12 80.5 39 92.3
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.0e-12 80.5 90 53.3
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.5e-11 76.6 55 65.5
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 3.6e-10 72.0 50 72.0
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.5e-08 66.6 46 65.2
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.0e-08 66.2 79 45.6
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 2.6e-08 65.9 34 76.5
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.2e-07 62.8 44 70.5
RcHm_v2.0_Chr1g0356931 Rosa chinensis HOM05D004297 ORTHO05D348627 6.4e-07 61.2 57 57.9


User provided reference genes

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