Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 7.2e-70 267.3 153 100.0
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 4.0e-44 181.8 152 76.3
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 5.4e-41 171.4 157 71.3
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 1.1e-30 137.1 149 52.3
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 5.6e-30 134.8 126 56.3
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.6e-29 132.1 157 50.3
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.0e-28 130.6 125 58.4
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 1.8e-28 129.8 126 61.1
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 2.3e-28 129.4 127 55.9
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 3.1e-28 129.0 125 61.6
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 3.4e-27 125.6 126 55.6
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 1.7e-26 123.2 127 54.3
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 2.9e-26 122.5 129 57.4
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 4.9e-26 121.7 125 53.6
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 4.9e-26 121.7 126 54.0
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 8.3e-26 120.9 126 53.2
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.1e-25 120.6 127 54.3
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.4e-25 120.2 123 56.9
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 2.4e-25 119.4 123 53.7
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 3.2e-25 119.0 124 54.8
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.6e-24 116.7 123 55.3
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 3.5e-24 115.5 123 55.3
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 1.7e-23 113.2 123 52.8
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 3.0e-23 112.5 126 49.2
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 6.6e-23 111.3 127 52.8
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 6.6e-23 111.3 88 80.7
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 6.6e-23 111.3 125 52.8
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 6.6e-23 111.3 121 53.7
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 8.6e-23 110.9 122 55.7
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.5e-22 110.2 126 50.8
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 1.9e-22 109.8 126 50.8
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 2.5e-22 109.4 127 48.8
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 9.5e-22 107.5 128 54.7
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 1.2e-21 107.1 131 51.9
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 1.2e-21 107.1 127 50.4
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 1.6e-21 106.7 171 43.3
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 1.6e-21 106.7 126 50.8
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 2.8e-21 105.9 126 54.0
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 2.8e-21 105.9 127 50.4
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 3.6e-21 105.5 121 52.1
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 4.7e-21 105.1 127 49.6
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 8.1e-21 104.4 164 40.9
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.1e-20 104.0 127 49.6
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.4e-20 103.6 152 45.4
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 1.8e-20 103.2 124 50.0
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 4.0e-20 102.1 127 47.2
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 6.8e-20 101.3 158 44.3
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 6.8e-20 101.3 125 51.2
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 8.9e-20 100.9 145 48.3
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 1.2e-19 100.5 123 50.4
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 2.6e-19 99.4 122 52.5
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 2.6e-19 99.4 132 47.7
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 5.8e-19 98.2 125 46.4
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 7.5e-19 97.8 125 44.0
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 9.8e-19 97.4 126 47.6
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 1.3e-18 97.1 131 44.3
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 2.9e-18 95.9 123 48.8
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 3.7e-18 95.5 127 46.5
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.9e-18 95.1 125 47.2
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 6.4e-18 94.7 125 46.4
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.4e-18 94.7 125 46.4
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 6.4e-18 94.7 122 46.7
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 8.3e-18 94.4 125 46.4
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 1.1e-17 94.0 128 44.5
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.1e-17 94.0 125 46.4
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 1.1e-17 94.0 126 46.8
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 1.4e-17 93.6 127 47.2
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.4e-17 92.8 125 46.4
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 2.4e-17 92.8 124 46.0
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 2.4e-17 92.8 136 42.6
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 4.1e-17 92.0 123 45.5
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 4.1e-17 92.0 136 44.9
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 9.2e-17 90.9 125 46.4
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 9.2e-17 90.9 120 47.5
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 1.6e-16 90.1 144 39.6
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 2.1e-16 89.7 123 46.3
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 2.1e-16 89.7 126 45.2
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 2.1e-16 89.7 144 41.7
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 2.7e-16 89.4 121 46.3
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 6.0e-16 88.2 119 46.2
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 6.0e-16 88.2 135 46.7
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 7.8e-16 87.8 147 40.1
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.0e-15 87.4 119 48.7
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.0e-15 87.4 127 44.9
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.3e-15 86.3 118 44.9
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 5.1e-15 85.1 118 44.1
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 5.1e-15 85.1 127 44.1
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.5e-14 83.6 122 46.7
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.5e-14 83.6 122 46.7
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 1.9e-14 83.2 120 45.0
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 2.5e-14 82.8 127 44.9
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 3.3e-14 82.4 127 40.9
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 3.3e-14 82.4 127 40.9
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 3.3e-14 82.4 108 46.3
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 4.3e-14 82.0 127 43.3
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.6e-14 81.6 124 42.7
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.6e-13 80.1 126 42.1
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 4.7e-13 78.6 190 35.8
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 8.1e-13 77.8 115 42.6
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 8.1e-13 77.8 117 40.2
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 8.1e-13 77.8 126 42.1
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 8.1e-13 77.8 132 40.2
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.2e-12 75.1 127 40.2
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 6.8e-12 74.7 126 41.3
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 8.9e-12 74.3 204 30.4
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 1.5e-11 73.6 126 40.5
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 1.5e-11 73.6 126 40.5
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 1.5e-11 73.6 126 40.5
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 2.6e-11 72.8 76 53.9
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 1.7e-10 70.1 117 38.5
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 5.4e-09 65.1 179 31.8
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 5.4e-09 65.1 67 52.2
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.3e-07 60.5 97 44.3
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 3.9e-07 58.9 88 40.9
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 3.9e-07 58.9 69 47.8
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 6.6e-07 58.2 92 40.2
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.1e-06 57.4 129 34.9
CARHR248680 Cardamine hirsuta HOM05D006065 ORTHO05D007672 7.3e-06 54.7 124 33.1
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 9.6e-06 54.3 127 32.3


User provided reference genes

Program Settings