Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 1.7e-207 725.7 345 100.0
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 1.9e-174 615.9 345 84.9
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 6.0e-173 610.9 345 84.3
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 2.4e-150 535.8 342 73.4
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 9.3e-142 507.3 337 71.2
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 4.6e-141 505.0 349 68.5
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.3e-140 503.4 338 69.5
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 2.3e-140 502.7 332 69.9
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 1.9e-139 499.6 333 69.4
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 1.6e-138 496.5 328 69.2
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 1.6e-138 496.5 328 69.2
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 1.6e-138 496.5 328 69.2
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 2.8e-138 495.7 330 69.1
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 2.8e-138 495.7 335 68.4
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 6.2e-138 494.6 331 68.3
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 5.3e-137 491.5 343 66.5
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 2.6e-136 489.2 340 66.5
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 5.8e-136 488.0 332 67.8
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 1.3e-135 486.9 330 69.1
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 1.7e-135 486.5 338 65.7
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 2.9e-135 485.7 330 69.7
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 2.9e-135 485.7 330 66.7
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 3.8e-135 485.3 331 66.8
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 8.4e-135 484.2 332 68.4
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 8.4e-135 484.2 335 66.6
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 1.9e-134 483.0 342 65.2
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 2.5e-134 482.6 333 68.8
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 2.5e-134 482.6 330 68.2
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 3.2e-134 482.3 332 68.4
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 5.5e-134 481.5 332 65.4
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 7.1e-134 481.1 334 67.7
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 9.3e-134 480.7 332 66.0
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 1.2e-133 480.3 332 67.8
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 1.6e-133 479.9 332 66.0
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 2.7e-133 479.2 332 65.7
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 4.6e-133 478.4 342 64.6
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.3e-132 476.9 332 65.7
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 1.3e-132 476.9 338 65.7
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.8e-132 476.5 332 65.4
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 2.3e-132 476.1 342 64.0
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 3.9e-132 475.3 341 67.7
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 5.1e-132 474.9 332 65.4
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 5.1e-132 474.9 332 66.3
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 5.1e-132 474.9 332 67.2
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 6.7e-132 474.6 332 65.4
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 6.7e-132 474.6 332 64.5
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 1.1e-131 473.8 328 69.2
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 1.5e-131 473.4 332 65.1
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 1.5e-131 473.4 332 65.1
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.9e-131 473.0 330 67.3
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 1.9e-131 473.0 338 65.4
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 3.3e-131 472.2 327 66.7
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 3.3e-131 472.2 327 66.7
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 3.3e-131 472.2 330 67.9
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 3.3e-131 472.2 332 67.2
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 4.3e-131 471.9 332 66.0
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 7.4e-131 471.1 330 67.9
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 9.6e-131 470.7 328 65.9
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 1.3e-130 470.3 330 66.7
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 1.6e-130 469.9 332 64.8
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.6e-130 469.9 332 66.9
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 1.6e-130 469.9 332 65.1
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 4.8e-130 468.4 314 69.4
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 8.2e-130 467.6 332 66.0
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 5.3e-129 464.9 341 63.9
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 5.3e-129 464.9 332 66.6
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 5.3e-129 464.9 328 64.6
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 6.9e-129 464.5 332 66.3
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 3.4e-128 462.2 327 66.1
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 3.4e-128 462.2 325 66.2
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 3.4e-128 462.2 336 66.1
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 2.2e-127 459.5 332 65.4
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 3.8e-127 458.8 327 65.7
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 5.0e-127 458.4 338 63.0
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 2.5e-126 456.1 359 61.3
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 5.5e-126 454.9 332 66.9
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 9.3e-126 454.1 327 65.4
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 9.3e-126 454.1 328 66.5
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 9.3e-126 454.1 342 63.5
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 7.9e-125 451.1 325 64.3
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 1.8e-124 449.9 327 63.3
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 3.9e-124 448.7 327 63.3
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 1.1e-123 447.2 332 62.7
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 1.5e-123 446.8 330 63.6
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 3.3e-123 445.7 332 62.0
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 4.3e-123 445.3 333 62.2
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 5.7e-123 444.9 333 63.4
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 5.7e-123 444.9 327 63.9
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 1.3e-122 443.7 327 61.8
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 6.3e-122 441.4 330 63.0
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.5e-120 436.8 376 58.5
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 7.7e-120 434.5 331 61.9
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 2.9e-119 432.6 341 61.0
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 1.1e-118 430.6 328 62.5
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.0e-116 424.1 332 62.7
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 1.5e-115 420.2 316 62.3
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 2.2e-114 416.4 328 60.1
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 4.8e-114 415.2 325 58.5
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 1.1e-113 414.1 334 59.0
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 1.3e-111 407.1 280 68.9
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.2e-111 406.4 336 58.0
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 2.9e-111 406.0 346 58.1
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 8.8e-108 394.4 340 54.1
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 8.2e-106 387.9 325 54.2
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 2.2e-103 379.8 275 64.7
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 2.2e-103 379.8 324 55.2
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 2.9e-103 379.4 330 55.8
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 3.8e-103 379.0 338 54.4
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 2.7e-101 372.9 326 56.1
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 6.1e-101 371.7 319 56.1
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 1.2e-99 367.5 324 56.5
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 9.1e-97 357.8 337 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 1.7e-95 353.6 325 52.3
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 8.5e-95 351.3 335 50.1
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 6.8e-92 341.7 280 56.1
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 3.4e-91 339.3 327 50.8
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 1.4e-89 334.0 273 54.9
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 4.1e-89 332.4 258 63.6
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 7.0e-89 331.6 330 49.7
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 5.5e-86 322.0 335 50.1
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 2.8e-85 319.7 332 48.2
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 3.6e-85 319.3 172 91.9
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 1.4e-84 317.4 338 45.9
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 2.2e-82 310.1 225 64.4
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 4.1e-81 305.8 251 59.4
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 5.6e-78 295.4 210 68.1
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 1.3e-74 284.3 210 63.8
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 1.1e-65 254.6 167 66.5
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 3.2e-65 253.1 202 60.4
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 1.3e-63 247.7 195 59.5
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 1.1e-60 238.0 165 63.6
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 3.4e-51 206.5 160 60.0
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 3.4e-51 206.5 168 60.1
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 7.8e-48 195.3 143 62.2
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 9.3e-41 171.8 116 62.1
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 2.3e-39 167.2 306 34.6
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 2.3e-39 167.2 112 67.9
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 1.4e-33 147.9 122 50.8
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 3.2e-33 146.7 150 51.3
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 9.3e-33 145.2 126 61.9
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 1.3e-31 141.4 184 45.7
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 8.1e-29 132.1 89 62.9
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.1e-20 105.1 71 64.8
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 3.1e-20 103.6 62 71.0
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 2.5e-17 94.0 94 59.6
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 1.6e-16 91.3 62 62.9
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 2.8e-13 80.5 76 53.9
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 5.5e-09 66.2 55 49.1
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 7.4e-06 55.8 42 54.8


User provided reference genes

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