Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 9.7e-189 663.3 329 100.0
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.8e-171 605.9 364 84.1
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.7e-156 555.1 364 78.6
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 5.2e-150 534.6 372 76.3
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 7.8e-146 520.8 370 72.7
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 7.3e-144 514.2 370 71.9
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.7e-140 503.1 370 69.7
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.0e-138 496.1 370 68.6
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 7.8e-138 494.2 364 71.2
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.6e-137 490.7 371 67.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.6e-136 488.0 364 69.2
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 9.5e-136 487.3 370 66.8
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.6e-135 486.5 371 66.6
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.8e-135 485.7 370 69.2
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 4.7e-135 485.0 370 68.4
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 4.7e-135 485.0 371 67.4
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.4e-134 483.4 372 68.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.8e-134 483.0 371 67.1
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.8e-134 483.0 370 65.7
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.3e-134 482.6 372 67.7
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.0e-133 479.6 367 67.3
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 4.9e-132 474.9 370 67.6
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 6.6e-129 464.5 368 66.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.9e-128 463.0 370 64.1
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 7.3e-128 461.1 364 66.5
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 9.5e-128 460.7 366 66.1
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.8e-127 459.1 367 65.4
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 4.7e-127 458.4 364 65.1
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.1e-126 457.2 370 64.3
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.8e-126 456.4 369 62.6
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-126 455.7 370 63.5
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 6.8e-126 454.5 365 65.8
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.2e-125 453.8 370 63.5
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.0e-125 453.0 375 62.4
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.4e-125 452.2 364 63.7
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 9.9e-125 450.7 371 64.2
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 8.3e-124 447.6 370 62.2
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 8.3e-124 447.6 370 62.4
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.6e-122 443.4 366 64.8
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.5e-122 442.2 368 64.7
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.5e-122 442.2 363 64.5
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.7e-121 439.9 366 64.8
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.3e-121 439.5 367 61.9
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.3e-120 435.6 370 61.6
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.1e-119 433.0 372 60.5
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 2.8e-119 432.6 366 62.0
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.1e-119 431.0 367 61.6
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.1e-119 431.0 367 61.6
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 8.1e-119 431.0 364 60.7
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.3e-116 423.7 343 65.3
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 4.9e-116 421.8 370 60.8
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 4.9e-116 421.8 371 59.6
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 4.9e-116 421.8 350 64.0
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 4.9e-116 421.8 375 60.8
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.1e-115 420.6 362 61.3
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.6e-114 416.8 374 59.9
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 2.1e-114 416.4 345 63.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 4.6e-114 415.2 360 60.6
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.0e-113 414.1 369 55.6
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.3e-113 412.9 380 60.0
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 3.9e-113 412.1 372 59.7
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 3.3e-112 409.1 340 62.9
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 7.3e-112 407.9 369 55.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.8e-111 406.0 369 58.3
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 3.6e-111 405.6 372 58.1
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.6e-111 405.6 370 54.9
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 4.7e-111 405.2 372 58.1
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 6.2e-111 404.8 372 58.3
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.4e-110 403.7 373 57.4
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.4e-110 403.7 371 59.0
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 5.2e-110 401.7 373 57.1
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 5.2e-110 401.7 369 54.2
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 5.2e-110 401.7 364 58.0
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 6.9e-110 401.4 374 57.0
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.9e-110 401.4 329 65.7
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 6.9e-110 401.4 378 58.7
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-109 399.8 372 57.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 3.4e-109 399.1 374 58.3
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 2.2e-108 396.4 372 57.3
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.9e-108 396.0 327 63.3
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 8.4e-108 394.4 381 56.7
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 8.4e-108 394.4 373 56.8
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.4e-107 392.9 374 57.0
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.4e-107 392.9 370 57.0
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.4e-107 392.9 368 57.6
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 4.2e-107 392.1 365 57.8
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.2e-107 392.1 396 54.8
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 2.3e-105 386.3 371 56.6
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.1e-105 385.2 384 55.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.1e-104 384.0 351 59.5
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 4.8e-103 378.6 371 55.5
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 8.1e-103 377.9 374 55.6
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.4e-102 377.1 417 50.4
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.8e-102 376.7 329 60.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 9.0e-102 374.4 356 55.9
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.2e-101 374.0 324 60.8
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 4.5e-101 372.1 341 58.4
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.3e-100 370.5 371 54.7
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.9e-99 366.7 350 57.4
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.2e-99 365.5 351 56.1
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.2e-99 365.5 357 50.4
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 3.5e-98 362.5 346 54.9
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 4.6e-98 362.1 321 57.3
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.3e-97 360.5 349 57.0
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 5.1e-97 358.6 306 62.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 6.7e-97 358.2 332 57.8
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 6.7e-97 358.2 368 50.5
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 4.3e-96 355.5 361 49.3
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.3e-95 354.0 360 48.6
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.3e-95 354.0 360 48.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 6.2e-95 351.7 346 55.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 4.0e-94 349.0 335 56.1
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 6.9e-94 348.2 381 48.3
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 9.9e-93 344.4 371 52.0
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 4.9e-92 342.0 377 49.9
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.9e-91 340.1 356 53.4
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 3.7e-87 325.9 307 56.7
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 4.8e-87 325.5 337 49.3
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 4.8e-87 325.5 322 51.9
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.5e-80 303.1 277 58.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 4.3e-80 302.4 468 41.0
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 5.7e-80 302.0 261 60.5
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.8e-78 297.0 371 44.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.8e-73 280.4 335 47.8
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.7e-72 274.6 376 42.6
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.2e-68 263.5 298 52.0
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.2e-68 263.5 403 38.7
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 7.9e-66 255.0 213 61.0
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.0e-65 253.1 367 40.1
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 5.1e-65 252.3 241 57.7
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.1e-64 251.1 257 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.1e-62 244.6 378 38.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.1e-62 243.0 271 50.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.5e-56 224.2 227 56.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.6e-56 223.4 322 38.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.5e-51 207.6 259 48.6
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.0e-49 199.5 115 79.1
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 6.7e-49 198.7 249 47.8
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.6e-48 196.8 350 33.7
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 4.8e-47 192.6 251 42.2
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.8e-46 190.7 213 48.4
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.1e-43 181.4 137 62.8
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.9e-43 180.6 135 66.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.8e-41 172.2 204 49.5
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.7e-28 131.0 149 53.7
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 8.6e-28 128.6 74 81.1
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.5e-21 106.7 131 48.1
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 5.0e-20 102.8 414 24.2
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.1e-19 101.7 247 28.7
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.8e-18 97.1 73 65.8
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.6e-13 81.3 42 90.5
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 3.6e-10 70.1 51 60.8
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 7.5e-08 62.4 59 52.5
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.4e-06 56.2 63 50.8


User provided reference genes

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