Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 4.4e-112 407.9 199 100.0
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.8e-105 386.0 219 89.5
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 5.2e-105 384.4 219 90.0
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 5.8e-104 380.9 199 95.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.0e-89 331.6 191 89.0
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.1e-81 307.0 195 78.5
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.4e-81 306.6 196 77.6
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 7.4e-75 284.3 203 71.4
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.3e-74 283.5 194 73.7
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.3e-74 283.5 194 73.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.3e-74 281.2 205 68.8
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.4e-73 280.0 193 72.5
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.4e-73 280.0 192 71.4
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.1e-73 278.9 196 70.9
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 4.1e-73 278.5 192 69.8
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 6.9e-73 277.7 199 68.8
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.2e-72 276.9 196 70.9
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.5e-72 276.6 195 69.7
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.0e-72 276.2 192 71.4
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 4.5e-72 275.0 202 68.8
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 5.9e-72 274.6 199 69.3
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.0e-71 273.9 199 69.3
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.3e-71 273.5 192 71.9
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.7e-71 273.1 192 70.3
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.7e-71 273.1 192 70.3
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 3.8e-71 271.9 194 69.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 6.5e-71 271.2 195 69.7
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 8.5e-71 270.8 193 68.9
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 8.5e-71 270.8 192 69.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.1e-70 270.4 198 68.7
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.9e-70 269.6 192 68.8
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.9e-70 269.6 197 69.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.5e-70 269.2 191 70.7
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 5.5e-70 268.1 195 67.7
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 5.5e-70 268.1 193 66.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 7.2e-70 267.7 200 68.5
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 7.2e-70 267.7 190 69.5
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.7e-69 265.8 195 69.7
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 2.7e-69 265.8 193 71.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 4.6e-69 265.0 198 66.2
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 7.9e-69 264.2 192 68.2
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.0e-68 263.8 213 62.9
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-68 263.5 197 67.0
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.3e-68 262.7 196 67.9
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.9e-68 261.9 190 70.0
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 5.1e-68 261.5 197 67.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 6.7e-68 261.2 200 67.5
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 8.7e-68 260.8 199 66.3
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 8.7e-68 260.8 196 65.8
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.1e-67 260.4 198 66.2
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.5e-67 259.2 191 68.1
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.5e-67 259.2 195 67.2
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.3e-67 258.8 191 66.5
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 7.4e-67 257.7 191 65.4
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 9.7e-67 257.3 197 65.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 9.7e-67 257.3 189 67.7
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.6e-66 256.5 200 67.0
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.6e-66 256.5 191 66.0
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 2.2e-66 256.1 200 66.5
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.2e-66 256.1 194 64.9
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.8e-66 255.8 199 65.3
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 3.7e-66 255.4 191 66.0
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.7e-66 255.4 194 66.5
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 6.3e-66 254.6 194 64.4
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.1e-65 253.8 187 69.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.1e-65 253.8 196 64.8
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.4e-65 252.7 195 64.6
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 4.1e-65 251.9 196 63.3
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.3e-65 251.5 189 65.6
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 5.3e-65 251.5 194 64.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.5e-64 250.0 190 65.3
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.5e-64 250.0 202 63.4
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.0e-64 249.6 191 64.9
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.2e-63 246.1 193 67.4
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.0e-63 245.0 194 61.3
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.5e-63 244.2 176 65.9
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.1e-61 239.6 225 56.9
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.6e-61 238.8 187 63.6
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.0e-60 235.7 177 65.0
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.1e-60 235.0 218 56.4
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.1e-59 233.8 179 64.8
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 4.4e-59 231.9 185 63.2
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 5.7e-59 231.5 189 66.1
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.3e-58 230.3 191 62.8
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.3e-58 230.3 196 62.8
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 2.2e-58 229.6 174 64.9
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.8e-58 229.2 190 61.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 9.1e-57 224.2 192 63.0
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 2.6e-56 222.6 188 60.6
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 2.6e-56 222.6 188 60.6
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.7e-55 219.9 297 45.8
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.9e-55 219.2 182 60.4
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.9e-55 219.2 194 59.8
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 3.8e-55 218.8 193 59.1
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 5.0e-55 218.4 264 47.7
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 4.2e-54 215.3 190 59.5
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 5.5e-54 214.9 192 57.3
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 7.2e-54 214.5 201 58.2
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.2e-53 213.8 194 58.2
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.2e-53 213.8 187 55.6
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 7.9e-53 211.1 194 58.2
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.0e-52 210.7 192 58.9
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.8e-52 209.9 185 59.5
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.9e-52 208.8 198 56.6
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 3.9e-52 208.8 191 60.2
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.1e-51 207.2 199 58.8
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.1e-51 207.2 187 56.1
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.1e-51 207.2 196 56.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 2.0e-51 206.5 198 55.6
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.3e-51 205.7 195 55.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 4.4e-51 205.3 193 56.5
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 7.4e-51 204.5 197 55.3
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 9.7e-51 204.1 192 55.2
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.3e-50 203.8 192 55.2
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.7e-50 203.4 192 55.2
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.7e-50 202.2 192 54.7
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.4e-49 200.3 157 65.0
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 5.3e-49 198.4 199 53.3
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.7e-47 193.4 189 58.7
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.2e-47 193.0 180 55.6
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 5.5e-46 188.3 178 53.9
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.8e-44 183.3 192 54.2
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.6e-43 179.5 183 55.2
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.7e-42 176.8 200 51.0
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 2.7e-40 169.5 181 50.8
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 4.5e-40 168.7 174 54.0
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.2e-37 160.6 124 61.3
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.8e-36 156.8 164 49.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-35 154.1 100 75.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.5e-35 153.7 169 44.4
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-34 150.6 97 75.3
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.2e-34 149.8 185 48.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.8e-28 130.2 99 68.7
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 5.7e-27 125.2 152 46.7
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 9.8e-27 124.4 95 55.8
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.2e-26 123.2 98 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 2.2e-26 123.2 125 48.8
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 3.7e-26 122.5 120 51.7
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 4.1e-25 119.0 117 56.4
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.6e-24 117.1 106 55.7
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.0e-23 114.4 107 55.1
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-23 113.2 137 48.9
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.8e-23 112.5 96 55.2
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 8.6e-23 111.3 104 60.6
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 2.1e-21 106.7 91 60.4
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.4e-20 104.0 116 49.1
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.4e-20 104.0 116 49.1
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.5e-19 100.5 113 45.1
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.0e-15 87.8 123 41.5
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 8.6e-15 84.7 65 66.2
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.6e-13 79.3 55 67.3
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 3.6e-13 79.3 117 40.2
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.4e-12 77.4 65 63.1
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 6.4e-10 68.6 45 68.9
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.4e-09 66.6 106 39.6
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.2e-08 64.3 56 62.5
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.2e-08 64.3 66 56.1
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 8.6e-07 58.2 62 51.6


User provided reference genes

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