Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.4e-202 707.2 363 100.0
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 3.0e-130 469.2 389 66.6
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 7.3e-129 464.5 357 72.3
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 6.4e-101 371.7 358 59.5
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 7.3e-97 358.2 224 85.3
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 2.9e-85 319.7 241 67.6
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.9e-85 318.9 353 53.3
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 6.4e-85 318.5 344 53.5
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 9.3e-84 314.7 244 66.0
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.2e-83 314.3 364 51.4
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.1e-83 313.5 275 60.0
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 3.0e-82 309.7 247 63.6
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.9e-82 309.3 241 66.0
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 6.7e-82 308.5 241 62.7
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 6.7e-82 308.5 353 53.3
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 8.7e-82 308.1 367 51.0
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.5e-81 307.4 241 64.7
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.5e-81 307.4 241 63.5
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.3e-81 306.2 241 62.2
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 3.3e-81 306.2 241 62.2
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 5.6e-81 305.4 241 63.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 9.6e-81 304.7 241 64.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 9.6e-81 304.7 242 64.9
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 2.1e-80 303.5 241 66.0
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.8e-80 303.1 241 64.3
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 2.8e-80 303.1 219 70.3
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.8e-80 302.4 241 63.9
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 6.2e-80 302.0 284 58.8
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 8.2e-80 301.6 230 67.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.1e-79 301.2 239 64.9
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.4e-79 300.8 245 64.5
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 2.4e-79 300.1 231 64.5
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 3.1e-79 299.7 227 67.8
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 3.1e-79 299.7 233 65.2
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 4.0e-79 299.3 206 72.8
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 9.0e-79 298.1 246 62.6
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.2e-78 297.7 235 64.7
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 4.5e-78 295.8 169 84.6
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 4.5e-78 295.8 246 63.0
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 5.8e-78 295.4 219 69.4
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.0e-77 294.7 284 57.0
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.0e-77 294.7 289 56.1
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.7e-77 293.9 239 62.3
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.9e-77 293.1 240 61.7
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 4.9e-77 292.4 243 63.4
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 6.5e-77 292.0 236 63.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 6.5e-77 292.0 236 63.6
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.4e-76 290.8 223 67.7
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.2e-76 289.7 277 56.0
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 7.1e-76 288.5 224 67.0
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 7.1e-76 288.5 206 68.9
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 7.1e-76 288.5 204 70.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 9.3e-76 288.1 205 69.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.6e-75 287.3 225 65.3
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.6e-75 287.3 204 70.1
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.1e-75 287.0 205 68.8
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.7e-75 286.6 230 61.7
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.6e-75 285.8 270 54.1
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.8e-74 283.9 222 64.9
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.3e-74 283.5 203 69.0
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.3e-74 283.5 203 70.0
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 3.0e-74 283.1 204 69.1
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 3.0e-74 283.1 204 69.1
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.9e-74 282.7 204 68.6
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.7e-74 282.0 233 62.2
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.9e-73 280.4 241 58.9
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.5e-73 280.0 204 67.6
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 2.5e-73 280.0 251 59.4
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.7e-73 278.9 241 60.6
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 7.4e-73 278.5 184 73.4
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 7.4e-73 278.5 184 73.4
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 7.4e-73 278.5 230 60.9
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 9.7e-73 278.1 337 48.4
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.2e-72 276.9 243 57.6
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 3.7e-72 276.2 219 66.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 4.8e-72 275.8 179 76.0
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 6.3e-72 275.4 207 67.6
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.4e-71 274.2 167 78.4
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-71 273.9 291 51.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.4e-71 273.5 208 64.9
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 2.4e-71 273.5 173 76.3
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 3.1e-71 273.1 246 58.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.1e-71 273.1 246 58.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.1e-71 273.1 246 58.5
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.2e-70 271.2 265 57.4
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 2.6e-70 270.0 242 61.6
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.6e-70 270.0 172 76.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 5.9e-70 268.9 173 76.9
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 5.9e-70 268.9 214 64.0
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 7.7e-70 268.5 170 76.5
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-69 267.7 168 76.2
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.9e-69 266.5 169 75.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 5.0e-69 265.8 173 75.1
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 6.5e-69 265.4 203 68.5
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 8.5e-69 265.0 170 77.1
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.1e-68 264.6 206 68.0
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.9e-68 263.8 222 62.6
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 2.5e-68 263.5 173 76.3
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 3.2e-68 263.1 220 63.2
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 5.5e-68 262.3 228 59.2
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 9.4e-68 261.5 188 68.6
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 2.1e-67 260.4 210 65.2
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 2.1e-67 260.4 239 57.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 2.7e-67 260.0 196 66.3
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.6e-67 259.6 270 53.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 3.9e-66 256.1 224 58.0
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 8.8e-66 255.0 167 73.1
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 5.7e-65 252.3 213 63.8
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 6.3e-64 248.8 171 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.4e-58 231.1 184 64.1
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.4e-58 231.1 165 71.5
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.8e-58 230.7 160 67.5
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 6.3e-56 222.2 173 62.4
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.2e-54 218.0 147 73.5
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 3.5e-54 216.5 189 61.4
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 1.3e-53 214.5 217 53.9
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.3e-53 214.5 232 53.0
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.2e-53 213.8 133 76.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 8.0e-51 205.3 160 66.2
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.8e-50 204.1 241 46.5
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 3.0e-50 203.4 147 70.1
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 6.7e-50 202.2 192 54.7
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.2e-43 181.4 108 77.8
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.5e-41 174.5 116 70.7
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 5.0e-37 159.5 92 81.5
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.6e-35 154.5 171 51.5
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 2.8e-32 143.7 92 73.9
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-31 141.4 230 41.3
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.3e-29 134.8 133 49.6
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 6.6e-29 132.5 159 43.4
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.9e-28 131.0 131 53.4
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.9e-28 131.0 131 53.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.5e-28 130.6 143 46.2
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 4.7e-27 126.3 191 39.8
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.3e-26 124.0 117 59.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 2.0e-22 110.9 106 57.5
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 2.1e-19 100.9 63 76.2
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.2e-14 85.1 112 49.1
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 7.8e-14 82.4 85 52.9
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.4e-09 67.0 43 67.4
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 2.2e-08 64.3 97 46.4
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 2.4e-07 60.8 61 47.5
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 2.1e-06 57.8 56 55.4


User provided reference genes

Program Settings