Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 8.6e-309 1062.8 518 100.0
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 1.6e-270 935.6 521 87.9
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 1.8e-210 736.1 526 70.2
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 2.3e-200 702.6 530 66.2
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 1.2e-198 696.8 533 66.8
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 3.4e-196 688.7 532 66.2
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 3.7e-195 685.3 538 65.6
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 1.4e-194 683.3 547 63.8
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 7.8e-193 677.6 537 64.6
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.3e-192 676.8 528 63.4
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.3e-192 676.8 528 63.8
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 3.0e-192 675.6 535 64.7
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 5.1e-192 674.9 532 65.4
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 6.2e-190 667.9 545 62.8
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 6.2e-190 667.9 462 69.3
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 1.1e-189 667.2 531 64.4
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.4e-189 666.8 555 61.8
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 2.6e-188 662.5 535 64.1
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 3.4e-188 662.1 534 63.5
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 5.8e-188 661.4 538 63.8
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 1.4e-186 656.8 541 64.7
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 3.2e-186 655.6 526 62.7
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 7.1e-186 654.4 535 62.6
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 1.2e-185 653.7 519 63.0
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 1.0e-184 650.6 518 62.0
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 2.3e-184 649.4 530 63.4
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 1.1e-183 647.1 531 61.8
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 1.6e-182 643.3 525 61.9
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 2.1e-182 642.9 535 62.6
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 4.7e-182 641.7 521 62.0
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 1.4e-181 640.2 527 60.9
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 1.5e-180 636.7 532 61.7
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 6.4e-179 631.3 503 62.4
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 1.4e-178 630.2 522 61.5
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 3.2e-178 629.0 531 60.3
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 3.2e-178 629.0 547 60.1
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 3.5e-177 625.5 521 61.2
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 6.0e-177 624.8 535 60.2
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 7.8e-177 624.4 558 59.5
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.0e-176 624.0 523 61.6
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 1.3e-176 623.6 408 74.3
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 1.7e-176 623.2 533 60.8
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.0e-176 622.5 532 60.7
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 3.9e-176 622.1 535 60.7
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.6e-176 621.3 533 60.8
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.5e-175 620.2 532 60.5
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 3.3e-175 619.0 534 59.7
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 7.3e-175 617.8 511 62.0
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 1.6e-174 616.7 528 59.5
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 4.8e-174 615.1 466 66.1
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 6.2e-174 614.8 569 56.6
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 1.1e-173 614.0 516 60.7
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.4e-173 613.6 532 60.3
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 2.4e-173 612.8 537 59.4
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 6.9e-173 611.3 541 57.7
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 6.4e-171 604.7 510 61.6
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 1.4e-170 603.6 466 65.0
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 1.4e-170 603.6 536 58.6
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 3.2e-170 602.4 534 59.0
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 3.2e-170 602.4 536 59.9
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 3.2e-170 602.4 412 70.1
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 3.5e-169 599.0 539 58.4
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 7.9e-169 597.8 518 58.9
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 1.0e-168 597.4 571 55.9
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 3.9e-168 595.5 521 58.3
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 1.9e-167 593.2 536 58.8
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.3e-166 590.5 564 55.9
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 4.8e-166 588.6 395 71.4
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 1.8e-165 586.6 542 56.8
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 9.0e-165 584.3 534 57.7
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 9.0e-165 584.3 461 62.7
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 1.5e-164 583.6 523 57.6
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.5e-164 583.6 471 62.2
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 2.6e-164 582.8 530 57.7
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 2.6e-164 582.8 472 62.3
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 3.4e-164 582.4 522 57.1
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 8.4e-163 577.8 522 57.1
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 8.4e-163 577.8 522 57.1
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 1.1e-162 577.4 496 59.7
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 3.2e-162 575.9 528 56.8
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 3.2e-162 575.9 470 61.9
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 1.6e-161 573.5 537 55.7
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 4.6e-161 572.0 493 61.1
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.6e-158 563.5 531 55.9
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 6.2e-158 561.6 537 56.8
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 3.4e-156 555.8 535 56.1
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 6.5e-155 551.6 726 44.2
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 1.2e-153 547.4 524 55.7
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 3.0e-152 542.7 408 65.9
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 5.1e-152 542.0 493 56.8
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 1.9e-151 540.0 441 62.8
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 2.0e-148 530.0 492 55.1
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 1.9e-146 523.5 458 58.7
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 1.0e-144 517.7 470 56.6
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 3.1e-141 506.1 471 56.5
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 3.3e-119 433.0 355 60.3
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 4.5e-116 422.5 279 72.8
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 1.2e-97 361.3 264 68.6
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 2.0e-92 344.0 192 80.7
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.0e-83 315.1 332 52.7
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 2.3e-80 303.9 328 51.8
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 4.0e-80 303.1 183 76.0
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 2.6e-79 300.4 342 51.8
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 1.9e-77 294.3 337 51.0
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.8e-72 277.7 228 57.0
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 1.5e-71 274.6 600 32.0
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.9e-69 267.7 163 74.8
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 2.4e-64 250.8 259 55.2
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 3.5e-60 236.9 601 30.6
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 3.3e-58 230.3 583 28.8
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 1.4e-48 198.4 473 30.4
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 8.4e-38 162.5 123 64.2
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 3.5e-36 157.1 203 44.8
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 1.4e-32 145.2 388 29.4
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 4.6e-28 130.2 147 50.3
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.1e-26 125.6 105 56.2
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 1.4e-21 108.6 58 79.3
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 7.4e-18 96.3 58 72.4
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 3.4e-15 87.4 87 52.9
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 2.9e-14 84.3 156 33.3
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 1.4e-13 82.0 185 33.5
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 1.4e-11 75.5 83 53.0
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 5.7e-10 70.1 100 38.0
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 5.7e-10 70.1 165 28.5
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 1.1e-08 65.9 36 77.8
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 1.2e-07 62.4 39 69.2


User provided reference genes

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