Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.7e-92 340.9 172 100.0
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.7e-88 329.3 172 96.5
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 3.6e-70 268.5 168 81.0
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 3.1e-69 265.4 168 77.4
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 8.9e-69 263.8 170 75.9
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.5e-68 263.1 168 76.2
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-67 260.0 165 77.6
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 8.4e-67 257.3 168 76.2
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.2e-66 255.4 168 76.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 4.1e-66 255.0 168 75.6
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 7.1e-66 254.2 168 75.0
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 9.2e-66 253.8 171 72.5
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-65 253.4 168 74.4
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 4.6e-65 251.5 168 75.0
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.0e-65 251.1 168 76.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.7e-64 249.6 168 76.2
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 3.0e-64 248.8 171 73.1
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.9e-63 246.1 166 74.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.5e-63 245.7 168 74.4
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.3e-63 245.0 168 73.8
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.6e-62 243.0 163 74.2
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.1e-62 242.7 165 72.7
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 8.1e-62 240.7 168 70.8
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 8.1e-62 240.7 165 73.3
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 2.4e-61 239.2 166 72.9
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 4.0e-61 238.4 168 69.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.2e-61 238.0 171 69.6
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.9e-61 237.7 168 72.0
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 6.9e-61 237.7 165 70.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.9e-61 237.7 166 70.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 9.0e-61 237.3 171 69.6
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 9.0e-61 237.3 168 72.0
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-60 236.9 171 69.0
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.5e-60 236.5 168 67.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.0e-60 236.1 165 70.3
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.4e-60 235.0 165 70.3
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.8e-60 234.6 165 71.5
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 5.8e-60 234.6 166 70.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.6e-60 234.2 167 69.5
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-59 233.4 168 68.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.7e-59 233.0 166 69.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 8.4e-59 230.7 167 70.1
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.1e-58 230.3 165 68.5
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.4e-58 229.9 163 70.6
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 3.2e-58 228.8 166 68.7
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.2e-58 228.8 166 68.7
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.4e-58 228.0 161 70.2
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.3e-58 227.3 168 67.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.6e-57 226.5 166 66.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 2.1e-57 226.1 166 68.1
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.1e-57 226.1 164 70.1
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.6e-57 224.9 126 88.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 6.0e-57 224.6 171 62.0
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 7.8e-57 224.2 165 67.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.0e-56 223.8 164 69.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.0e-56 223.8 164 70.1
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.3e-56 223.4 164 70.1
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 3.9e-56 221.9 168 66.7
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.9e-56 221.9 168 67.3
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 5.1e-56 221.5 168 65.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.1e-56 221.5 169 65.1
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.6e-56 221.1 168 66.7
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.6e-56 221.1 166 66.9
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 6.6e-56 221.1 168 66.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 8.7e-56 220.7 158 70.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 8.7e-56 220.7 166 68.1
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-55 220.3 163 67.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.9e-55 219.5 158 69.0
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 4.3e-55 218.4 164 68.3
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.6e-54 216.5 166 64.5
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.6e-54 216.5 166 63.3
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.6e-54 216.5 166 64.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 3.6e-54 215.3 163 66.3
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.6e-54 215.3 158 67.1
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.1e-54 214.2 166 65.1
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.1e-53 213.8 168 65.5
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.4e-53 213.4 168 63.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.1e-53 212.2 168 63.1
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.1e-53 212.2 165 67.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.0e-53 211.8 170 61.2
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 4.0e-53 211.8 164 67.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 6.9e-53 211.1 165 67.3
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.2e-52 210.3 165 67.3
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.2e-52 210.3 165 67.3
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.2e-52 210.3 168 66.1
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-52 209.9 165 66.7
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.5e-52 209.9 166 63.9
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.6e-52 209.1 166 64.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.6e-52 209.1 168 64.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 5.8e-52 208.0 158 66.5
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 7.6e-52 207.6 165 67.9
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.3e-51 206.8 166 64.5
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 6.4e-51 204.5 168 60.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 6.4e-51 204.5 168 63.1
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 8.4e-51 204.1 167 62.9
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 8.4e-51 204.1 167 62.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 62.9
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 1.9e-50 203.0 167 62.9
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.9e-50 203.0 171 63.7
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.4e-50 202.6 168 64.3
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 4.2e-50 201.8 168 63.1
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.4e-50 201.4 167 62.3
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.2e-49 200.3 163 63.2
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.1e-49 199.5 165 59.4
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 7.9e-49 197.6 153 64.7
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.3e-48 196.8 167 60.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 3.0e-48 195.7 130 74.6
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 8.7e-48 194.1 165 61.2
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 3.3e-47 192.2 159 62.9
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 7.4e-47 191.0 166 60.2
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 7.4e-47 191.0 166 60.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.1e-45 187.2 126 75.4
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 5.8e-44 181.4 161 59.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.3e-43 180.3 123 67.5
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.0e-41 171.4 169 56.2
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.8e-40 169.9 126 68.3
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.9e-40 168.7 169 55.6
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.9e-40 168.7 169 55.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 8.7e-40 167.5 158 55.7
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.5e-39 166.0 165 53.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.7e-38 162.2 163 57.7
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 4.8e-38 161.8 132 64.4
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 8.2e-38 161.0 171 53.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.2e-35 152.9 127 62.2
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 3.8e-35 152.1 119 62.2
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-34 150.2 129 59.7
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 7.1e-34 147.9 124 59.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 9.3e-34 147.5 171 49.1
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-33 146.7 113 62.8
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.3e-32 143.7 134 50.0
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.3e-32 142.9 124 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.7e-31 138.3 161 48.4
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 9.7e-31 137.5 99 63.6
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 9.7e-31 137.5 162 44.4
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.8e-30 136.0 159 47.8
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.3e-29 131.7 155 45.8
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 6.9e-29 131.3 83 77.1
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.3e-24 117.1 135 43.0
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.3e-24 116.3 158 38.6
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.5e-23 112.8 90 60.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 9.7e-23 110.9 121 44.6
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 3.1e-21 105.9 148 38.5
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 9.1e-21 104.4 66 71.2
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-18 97.1 65 78.5
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.5e-18 96.3 66 77.3
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.6e-17 93.6 71 57.7
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 3.6e-17 92.4 115 47.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-16 90.5 65 73.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.3e-16 89.7 64 70.3
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 5.7e-15 85.1 63 58.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.3e-14 81.6 57 73.7
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.3e-14 81.6 57 73.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.3e-14 81.6 61 68.9
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.0e-12 76.6 54 72.2
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.5e-12 75.5 64 62.5
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.7e-12 74.7 44 72.7
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.0e-11 74.3 84 41.7
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.0e-11 74.3 81 48.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 5.0e-11 72.0 82 45.1
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.5e-10 69.7 62 61.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.2e-10 68.9 89 48.3
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.6e-09 65.9 60 50.0
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 8.8e-08 61.2 105 36.2
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.1e-07 60.8 60 55.0
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.6e-07 59.7 74 43.2
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 5.7e-07 58.5 115 36.5
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.8e-06 56.2 42 66.7
Sabra09G0017000 Salix brachista HOM05D004294 ORTHO05D004899 2.8e-06 56.2 82 47.6


User provided reference genes

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