Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1697.6 861 100.0
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1605.5 865 93.6
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1524.6 865 89.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1488.8 915 83.9
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1444.5 866 85.2
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1439.1 866 84.3
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1430.2 870 83.4
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1427.5 858 83.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1427.5 856 83.2
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1425.2 868 83.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1419.8 859 82.4
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1409.8 867 82.6
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1406.7 854 82.8
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1406.0 868 82.0
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1402.5 869 82.0
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1401.3 855 82.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1400.6 830 84.9
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1400.2 869 82.3
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1400.2 865 81.8
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1399.8 859 82.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1399.8 869 82.3
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1399.0 869 82.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1395.2 855 81.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1391.7 843 82.2
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1385.9 854 81.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 859 82.0
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 865 80.9
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1380.5 866 80.5
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1379.4 868 80.5
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1379.0 866 80.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 855 82.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1375.5 895 78.3
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 846 82.2
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1374.0 855 82.6
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 824 83.6
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 861 80.8
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 861 81.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 879 79.5
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 868 81.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 853 82.3
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1370.9 861 80.7
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1370.1 863 81.3
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1369.4 856 81.2
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 844 82.5
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 861 80.6
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 856 82.0
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1364.4 856 80.7
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 856 80.7
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 852 80.0
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 851 81.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 845 81.8
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1350.9 863 78.8
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1349.0 855 79.4
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 877 79.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 853 80.1
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 890 74.4
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 845 80.7
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1343.9 849 80.8
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 841 80.3
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 828 81.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 860 79.3
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 858 79.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 841 80.6
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 841 80.6
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 866 80.3
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 833 80.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 832 81.0
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 811 81.8
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 839 80.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1327.8 806 82.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 837 79.5
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 879 76.6
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 839 79.9
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 839 79.5
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 838 81.0
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 897 74.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 856 78.0
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 854 77.9
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 847 79.1
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 836 80.3
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 839 80.5
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 839 80.3
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 852 78.3
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 892 76.1
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 841 78.4
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 847 78.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 856 78.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 838 79.7
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 857 77.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 849 78.3
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 842 77.8
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 847 78.4
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 847 78.4
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 821 80.5
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 856 77.9
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 856 77.9
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 856 77.9
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 856 77.9
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 831 80.5
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 818 80.3
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 824 79.7
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 832 79.6
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 779 84.1
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 821 78.3
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 873 75.5
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 818 79.8
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1278.1 849 78.0
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1278.1 837 77.1
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1276.5 849 77.9
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 814 79.2
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 822 80.2
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 866 75.6
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 831 76.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 814 78.3
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1261.1 780 82.2
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1251.5 829 78.8
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 826 75.8
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1250.0 831 75.6
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1248.0 829 75.5
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 863 75.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1243.8 812 78.7
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 826 78.6
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1231.9 828 76.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1231.5 822 72.0
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 720 84.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1218.0 826 75.8
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 879 73.3
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1213.4 821 75.2
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1208.0 837 76.8
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1204.5 832 76.1
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1193.7 838 74.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1191.0 752 79.5
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1189.1 839 73.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1187.9 827 73.3
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1169.8 889 68.8
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1157.1 819 70.8
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 825 71.4
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1143.6 779 73.9
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1125.2 736 80.6
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1112.4 823 69.7
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1109.0 837 68.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.8e-303 1045.8 833 67.6
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 5.3e-287 991.1 597 79.9
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.2e-277 959.1 842 63.4
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 4.5e-270 934.9 633 69.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.5e-265 919.8 558 84.6
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.3e-264 916.8 608 73.5
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 7.7e-262 907.5 520 83.8
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.6e-185 651.7 709 53.9
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.3e-149 533.9 463 59.4
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.1e-142 509.2 361 78.4
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 8.8e-141 505.4 327 75.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.4e-109 401.7 317 73.5
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.5e-103 380.9 264 71.2
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.2e-102 376.3 400 54.5
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.6e-89 333.6 584 45.4
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.6e-65 255.4 152 81.6
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.8e-59 234.2 159 74.8
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 3.4e-44 184.5 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.9e-35 154.8 480 29.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.4e-31 141.0 465 27.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.7e-30 139.0 76 85.5
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.7e-30 137.9 123 53.7
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.3e-30 137.1 460 26.3
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 5.9e-28 130.6 69 89.9
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 5.0e-27 127.5 432 28.0
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 5.5e-26 124.0 67 83.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.1e-25 120.6 473 26.6
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.4e-24 119.4 96 65.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-16 92.4 269 27.9
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.8e-16 92.4 146 37.7
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-16 92.0 223 31.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 4.5e-12 77.8 78 48.7
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-08 64.3 73 45.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 7.5e-07 60.5 38 76.3


User provided reference genes

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