Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 0.0e+00 2842.0 1397 100.0
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 0.0e+00 2361.6 1406 85.3
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 0.0e+00 1365.9 1435 53.2
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 0.0e+00 1249.6 1421 49.7
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 0.0e+00 1169.5 1420 46.3
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 0.0e+00 1161.7 1453 46.0
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 0.0e+00 1158.7 1427 47.0
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 0.0e+00 1154.0 1415 46.1
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 0.0e+00 1151.3 1448 46.1
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 0.0e+00 1140.9 1483 44.7
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1124.4 1439 45.8
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 0.0e+00 1120.5 1432 45.6
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 0.0e+00 1115.5 1427 45.9
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1091.3 1435 44.9
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1087.0 1431 45.2
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 0.0e+00 1080.9 1436 44.9
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 1.1e-305 1053.9 1441 43.8
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 4.9e-298 1028.5 1433 44.4
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 6.8e-292 1008.1 1450 42.8
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 6.2e-285 984.9 1444 42.3
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 6.4e-282 974.9 1295 46.0
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 2.1e-272 943.3 1446 41.4
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 8.1e-269 931.4 1425 41.0
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.4e-265 920.6 1456 40.5
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.8e-260 903.7 1368 41.7
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 5.4e-257 892.1 1425 41.1
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 9.6e-254 881.3 1425 40.9
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 4.8e-253 879.0 1424 38.3
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 6.9e-252 875.2 1391 38.9
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 5.8e-251 872.1 1444 37.7
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 6.0e-248 862.1 1448 38.6
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 8.7e-247 858.2 1420 39.5
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 4.3e-246 855.9 1426 38.8
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.7e-240 836.6 1425 39.9
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 9.6e-238 828.2 1384 39.2
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 1.1e-236 824.7 1384 39.0
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.4e-236 824.3 1440 37.9
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.8e-236 823.9 1438 38.2
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 5.7e-230 802.4 1469 36.0
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 9.0e-228 795.0 1424 37.4
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 2.0e-227 793.9 1446 37.4
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 7.7e-227 792.0 1415 37.1
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 1.0e-226 791.6 1425 37.1
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 1.9e-225 787.3 1432 37.0
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 2.1e-224 783.9 1461 38.6
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.4e-223 781.2 1433 37.3
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 2.3e-223 780.4 1438 37.1
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 1.8e-220 770.8 1421 36.6
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 1.5e-219 767.7 1427 36.7
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 2.2e-218 763.8 1264 39.2
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 9.4e-217 758.4 1444 36.5
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 2.1e-216 757.3 1417 34.9
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 3.9e-215 753.1 1410 36.6
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 6.7e-215 752.3 1420 36.2
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 7.0e-212 742.3 1422 36.4
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 2.6e-211 740.3 1415 34.5
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 2.2e-210 737.3 1409 36.5
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 2.2e-210 737.3 1405 36.6
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 2.9e-210 736.9 1415 36.2
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 1.5e-209 734.6 1405 36.5
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 2.5e-209 733.8 1412 36.5
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 1.1e-206 724.9 1404 36.3
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 2.0e-203 714.1 1428 35.5
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 5.0e-202 709.5 835 47.7
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 5.5e-201 706.1 1411 34.5
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 5.2e-199 699.5 1065 40.8
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 3.5e-195 686.8 1419 34.4
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 1.3e-194 684.9 1430 34.3
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.6e-192 677.9 1226 36.6
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 4.0e-191 673.3 1288 35.8
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 7.5e-190 669.1 1194 37.4
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 4.5e-187 659.8 1406 32.9
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 5.9e-187 659.4 1439 34.4
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.5e-185 654.1 1197 36.8
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 4.7e-184 649.8 1430 34.4
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 8.3e-181 639.0 1444 32.8
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 2.8e-176 624.0 1259 35.7
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 7.3e-161 572.8 1565 30.4
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 6.2e-160 569.7 940 37.3
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 8.1e-160 569.3 925 38.2
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 1.1e-159 568.9 1530 31.6
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 5.4e-156 556.6 1131 36.2
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 5.8e-142 510.0 1423 30.0
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 5.5e-124 450.3 1415 28.6
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 5.7e-121 440.3 828 37.6
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 2.6e-118 431.4 1423 28.6
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 1.3e-112 412.5 632 39.1
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 1.7e-109 402.1 404 54.7
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 7.7e-94 350.1 368 55.2
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.8e-90 336.7 389 46.8
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 1.1e-89 336.3 413 45.8
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 1.8e-87 328.9 444 41.9
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 9.4e-84 316.6 427 41.9
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 2.1e-83 315.5 423 42.8
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.2e-81 309.7 401 46.9
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 3.5e-78 298.1 768 30.1
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.3e-74 285.4 275 58.9
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 7.5e-73 280.4 259 53.3
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.4e-71 274.2 259 53.3
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.6e-70 272.7 365 45.2
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 4.3e-68 264.6 368 44.8
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 5.2e-58 231.1 1372 23.1
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 9.2e-55 220.3 206 52.9
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 7.8e-54 217.2 607 29.5
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 5.6e-52 211.1 410 35.4
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 2.3e-50 205.7 271 44.3
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 2.3e-45 189.1 406 34.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 3.8e-40 171.8 1261 22.0
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 1.4e-34 153.3 172 49.4
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 1.3e-32 146.7 306 31.7
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 5.4e-31 141.4 204 40.2
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 3.0e-29 135.6 269 39.0
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 8.7e-29 134.0 595 24.2
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.1e-28 133.7 189 39.7
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 4.3e-28 131.7 173 42.8
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 5.6e-28 131.3 611 24.2
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 9.0e-26 124.0 592 23.1
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 7.6e-25 120.9 213 34.7
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.4e-18 100.1 57 78.9
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 5.3e-18 98.2 256 28.9
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 3.4e-17 95.5 170 38.2
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.8e-16 92.0 291 30.2
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 6.4e-16 91.3 206 34.0
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 9.3e-15 87.4 51 76.5
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 8.7e-13 80.9 568 22.7
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 4.5e-09 68.6 375 22.9
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 4.5e-09 68.6 76 50.0
MBI16_g32432_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.1e-07 63.9 71 47.9
FAN18G1201 Fragaria x ananassa HOM05D010466 ORTHO05D007236 2.7e-06 59.3 86 36.0


User provided reference genes

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