Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.5e-144 515.4 250 100.0
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 3.7e-132 474.9 250 91.2
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 6.6e-105 384.4 250 74.8
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.5e-104 382.5 252 74.2
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.4e-101 372.1 252 72.2
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.2e-99 365.5 252 69.8
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.1e-99 364.4 252 69.4
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.2e-99 364.0 252 69.4
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 6.0e-98 361.3 252 69.8
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.6e-97 357.8 253 70.0
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 7.3e-96 354.4 252 68.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.2e-95 353.6 251 70.5
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 6.8e-94 347.8 235 71.9
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.5e-93 346.7 250 68.4
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.8e-93 344.7 251 67.3
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.8e-92 342.0 251 66.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.9e-92 341.7 251 68.1
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 6.4e-92 341.3 249 67.9
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 6.4e-92 341.3 252 66.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 7.1e-91 337.8 253 66.8
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 7.1e-91 337.8 252 68.3
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.1e-91 337.8 252 68.3
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 6.0e-90 334.7 252 67.1
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 7.8e-90 334.3 252 66.3
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 7.8e-90 334.3 183 84.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.0e-89 334.0 252 67.5
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.3e-89 332.8 252 65.5
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.3e-89 332.8 247 67.6
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.0e-89 332.4 251 66.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 8.6e-89 330.9 244 67.6
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 8.6e-89 330.9 252 66.7
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-88 330.5 253 66.4
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.9e-88 329.7 255 65.5
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.6e-88 328.2 247 66.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 7.3e-88 327.8 251 64.5
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 7.3e-88 327.8 182 83.5
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 9.6e-88 327.4 247 66.8
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.1e-87 326.2 241 66.8
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.4e-86 323.6 237 66.2
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-86 323.6 219 72.1
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.4e-86 322.8 246 66.7
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.1e-86 322.4 259 60.6
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.2e-86 321.6 251 64.9
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 6.9e-86 321.2 257 61.9
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.5e-85 320.1 252 62.3
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.5e-85 320.1 252 63.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 4.4e-85 318.5 253 62.8
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.4e-85 318.5 252 63.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 4.4e-85 318.5 259 61.8
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 5.8e-85 318.2 253 63.2
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 7.6e-85 317.8 259 62.2
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 9.9e-85 317.4 243 65.8
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 9.9e-85 317.4 259 61.8
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 9.9e-85 317.4 251 63.7
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.2e-84 316.2 252 63.9
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.9e-84 315.8 251 63.3
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.8e-84 315.5 252 62.3
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 6.4e-84 314.7 240 66.2
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 6.4e-84 314.7 251 62.9
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 6.4e-84 314.7 253 62.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.4e-84 314.3 243 65.4
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.1e-83 313.9 252 62.7
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.1e-83 313.9 255 62.0
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.1e-83 313.9 253 62.1
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.1e-83 313.9 255 62.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.4e-83 312.8 251 61.8
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 9.3e-83 310.8 252 61.9
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.2e-82 310.5 253 60.9
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.7e-82 309.3 250 62.8
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 3.5e-82 308.9 252 61.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 4.6e-82 308.5 260 58.8
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 7.8e-82 307.8 253 59.3
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.3e-81 307.0 256 60.9
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.3e-81 306.2 255 60.8
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 3.0e-81 305.8 247 61.5
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.0e-81 305.8 255 63.1
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 3.9e-81 305.4 254 61.8
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.9e-81 305.4 258 59.3
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 6.6e-81 304.7 177 78.0
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 1.5e-80 303.5 251 63.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.5e-80 303.5 257 58.8
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.5e-80 303.5 249 61.8
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.5e-80 303.5 254 60.2
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.5e-80 302.8 253 60.1
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 3.3e-80 302.4 261 58.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.3e-80 302.0 252 59.1
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 9.6e-80 300.8 253 59.7
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 9.6e-80 300.8 249 61.0
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 9.6e-80 300.8 238 61.8
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.6e-79 300.1 252 59.9
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.6e-79 300.1 251 59.8
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.6e-79 300.1 244 64.3
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.6e-79 300.1 244 64.3
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.1e-79 299.7 286 55.6
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 3.6e-79 298.9 255 60.0
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 6.2e-79 298.1 253 60.5
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.1e-79 297.7 225 62.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.1e-78 297.4 184 72.8
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.4e-78 297.0 178 75.3
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.4e-78 297.0 255 58.8
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 2.4e-78 296.2 254 58.7
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.4e-78 296.2 250 60.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.4e-78 296.2 250 60.8
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 3.1e-78 295.8 249 59.0
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.3e-78 295.0 241 62.7
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 6.9e-78 294.7 256 58.2
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 9.0e-78 294.3 252 57.5
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.2e-77 293.9 241 62.2
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.3e-76 290.4 233 61.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.1e-75 287.3 248 60.1
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.4e-75 287.0 211 65.4
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-75 286.6 251 58.2
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 7.1e-75 284.6 210 67.6
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.2e-74 283.9 209 69.9
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-74 283.9 243 57.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.9e-74 281.2 246 56.1
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.8e-73 280.0 213 62.9
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.3e-73 279.6 228 64.9
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 8.7e-73 277.7 181 70.2
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.6e-71 273.5 247 55.9
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.1e-71 273.1 248 57.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.1e-71 271.2 150 83.3
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.2e-69 267.3 248 53.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.6e-69 266.2 211 64.5
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.9e-68 261.9 148 81.8
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 3.2e-67 259.2 247 57.1
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 6.0e-66 255.0 252 53.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 5.1e-65 251.9 190 62.6
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 2.5e-64 249.6 212 60.4
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.1e-62 242.7 149 74.5
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.5e-61 238.8 250 50.8
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.5e-60 235.0 255 50.6
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.4e-60 234.6 160 71.9
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.4e-59 233.8 213 56.3
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 8.7e-57 224.6 142 72.5
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.8e-55 218.8 168 58.9
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.8e-54 216.9 170 57.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.0e-53 213.4 163 60.1
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 7.6e-53 211.5 175 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.9e-52 209.5 162 59.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 6.5e-52 208.4 111 84.7
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.4e-51 207.2 171 54.4
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.0e-49 199.5 250 46.0
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 4.3e-48 195.7 250 46.4
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-36 157.1 142 57.7
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-35 153.7 208 44.2
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 5.2e-33 145.6 102 66.7
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 7.4e-32 141.7 84 76.2
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.3e-30 135.6 82 70.7
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.6e-29 133.3 91 68.1
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.2e-28 130.2 127 53.5
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 4.7e-26 122.5 71 81.7
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 6.1e-26 122.1 213 31.5
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-24 117.5 71 76.1
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 7.0e-22 108.6 78 67.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 3.5e-21 106.3 137 38.7
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.5e-20 102.1 67 68.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 5.5e-19 99.0 65 66.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 9.8e-16 88.2 86 51.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.4e-14 84.3 47 78.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 3.5e-13 79.7 46 76.1
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.5e-13 79.3 39 87.2
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-12 77.8 47 74.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.0e-12 75.9 46 73.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.0e-09 68.2 100 40.0
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.8e-09 65.5 43 69.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 2.8e-07 60.1 36 69.4


User provided reference genes

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