Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 4.1e-37 157.5 78 100.0
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.8e-13 79.0 48 81.2
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.8e-13 79.0 48 79.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.6e-12 75.9 60 61.7
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.0e-12 75.5 48 75.0
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 3.5e-12 74.7 60 61.7
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.3e-11 72.8 42 83.3
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.3e-11 72.8 48 68.8
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.3e-11 72.8 48 70.8
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.3e-11 72.0 48 72.9
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 2.9e-11 71.6 48 70.8
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 3.9e-11 71.2 48 70.8
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 3.9e-11 71.2 48 68.8
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 5.0e-11 70.9 48 66.7
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 8.6e-11 70.1 48 70.8
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.1e-10 69.7 48 64.6
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.1e-10 69.7 48 66.7
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.5e-10 69.3 48 66.7
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.5e-10 69.3 48 70.8
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 1.5e-10 69.3 48 64.6
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.9e-10 68.9 56 66.1
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.9e-10 68.9 48 66.7
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.9e-10 68.9 48 66.7
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.5e-10 68.6 48 64.6
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.5e-10 68.6 48 66.7
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 3.3e-10 68.2 67 50.7
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 3.3e-10 68.2 48 68.8
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 3.3e-10 68.2 48 66.7
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 3.3e-10 68.2 48 66.7
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 4.3e-10 67.8 48 64.6
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 4.3e-10 67.8 48 64.6
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 4.3e-10 67.8 48 68.8
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 5.6e-10 67.4 48 70.8
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.6e-10 67.4 48 70.8
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.6e-10 67.4 48 70.8
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.6e-10 67.4 48 70.8
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.6e-10 67.4 48 70.8
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 5.6e-10 67.4 48 62.5
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 7.3e-10 67.0 55 61.8
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 7.3e-10 67.0 48 62.5
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 7.3e-10 67.0 48 64.6
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 9.5e-10 66.6 48 60.4
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 9.5e-10 66.6 48 60.4
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 9.5e-10 66.6 48 64.6
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 9.5e-10 66.6 48 64.6
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.2e-09 66.2 48 64.6
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.6e-09 65.9 48 64.6
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.1e-09 65.5 48 60.4
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.1e-09 65.5 49 63.3
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.1e-09 65.5 48 62.5
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.8e-09 65.1 48 64.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.8e-09 65.1 55 61.8
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.8e-09 65.1 48 66.7
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 3.6e-09 64.7 48 64.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 3.6e-09 64.7 48 64.6
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 4.7e-09 64.3 55 60.0
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.7e-09 64.3 48 66.7
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 6.2e-09 63.9 48 60.4
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 8.0e-09 63.5 48 62.5
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.0e-08 63.2 54 55.6
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.0e-08 63.2 40 72.5
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.8e-08 62.4 48 62.5
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.8e-08 62.4 48 62.5
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 1.8e-08 62.4 48 60.4
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.3e-08 62.0 48 60.4
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 2.3e-08 62.0 48 60.4
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 3.1e-08 61.6 48 58.3
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 3.1e-08 61.6 55 58.2
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 5.2e-08 60.8 48 58.3
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 6.8e-08 60.5 48 60.4
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 6.8e-08 60.5 48 60.4
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 6.8e-08 60.5 48 60.4
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 6.8e-08 60.5 48 60.4
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 6.8e-08 60.5 48 56.2
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 8.9e-08 60.1 48 58.3
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 8.9e-08 60.1 40 75.0
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 8.9e-08 60.1 40 70.0
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 8.9e-08 60.1 48 58.3
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.2e-07 59.7 48 56.2
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.2e-07 59.7 42 66.7
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.2e-07 59.7 42 66.7
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.2e-07 59.7 43 65.1
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.5e-07 59.3 45 57.8
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.5e-07 59.3 48 56.2
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 2.0e-07 58.9 48 56.2
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-07 58.5 48 56.2
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-07 58.5 48 58.3
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 2.6e-07 58.5 48 58.3
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 3.4e-07 58.2 48 56.2
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.4e-07 58.2 48 56.2
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 3.4e-07 58.2 48 56.2
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 3.4e-07 58.2 48 56.2
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 3.4e-07 58.2 48 56.2
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 3.4e-07 58.2 48 56.2
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 5.8e-07 57.4 48 56.2
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 7.5e-07 57.0 48 56.2
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 7.5e-07 57.0 48 52.1
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 9.8e-07 56.6 48 56.2
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-06 56.2 48 56.2
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.3e-06 56.2 40 67.5
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.7e-06 55.8 48 54.2
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.7e-06 55.8 43 58.1
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 2.2e-06 55.5 48 56.2
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.2e-06 55.5 48 54.2
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 2.9e-06 55.1 45 57.8
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 4.9e-06 54.3 43 58.1
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 4.9e-06 54.3 45 55.6
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 4.9e-06 54.3 45 55.6
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 4.9e-06 54.3 45 55.6
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 6.4e-06 53.9 40 62.5
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 6.4e-06 53.9 47 51.1
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 8.3e-06 53.5 45 55.6
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 8.3e-06 53.5 45 55.6
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 8.3e-06 53.5 48 54.2


User provided reference genes

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