Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 3.8e-210 734.6 366 100.0
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.2e-157 559.3 317 90.5
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.2e-155 553.5 316 89.2
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 6.2e-136 488.0 326 79.1
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 4.4e-134 481.9 323 76.8
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 7.6e-134 481.1 323 75.5
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.1e-132 477.2 323 74.6
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 9.3e-132 474.2 322 74.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 1.2e-131 473.8 322 75.2
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 6.0e-131 471.5 323 74.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.3e-130 470.3 326 74.5
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.7e-130 469.9 324 74.4
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 8.7e-130 467.6 324 74.1
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.1e-127 460.7 322 72.0
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.8e-127 459.9 322 73.3
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.2e-126 457.2 323 72.1
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.0e-126 456.4 321 72.0
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 3.4e-126 455.7 322 72.7
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 3.4e-126 455.7 322 73.3
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 4.4e-126 455.3 323 74.6
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.2e-125 453.0 324 71.3
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 8.4e-125 451.1 320 72.2
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 1.1e-124 450.7 323 74.0
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.9e-124 449.9 323 70.9
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.9e-124 449.9 320 70.6
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 2.4e-124 449.5 320 70.3
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 9.3e-124 447.6 322 71.4
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.2e-123 447.2 325 71.4
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.2e-123 447.2 325 71.4
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 2.1e-123 446.4 323 72.1
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 2.7e-123 446.0 324 72.8
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 4.6e-123 445.3 326 72.1
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 6.0e-123 444.9 322 71.1
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 6.0e-123 444.9 319 70.8
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 7.9e-123 444.5 324 69.8
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.3e-122 443.7 322 71.4
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.7e-122 443.4 322 71.7
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 2.3e-122 443.0 320 70.9
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 2.3e-122 443.0 324 71.6
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 3.0e-122 442.6 322 70.8
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.0e-122 442.6 320 70.6
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 3.0e-122 442.6 323 71.8
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 8.7e-122 441.0 320 70.0
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 1.1e-121 440.7 322 72.4
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 1.5e-121 440.3 322 71.4
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 2.5e-121 439.5 322 70.8
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 2.5e-121 439.5 332 70.5
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.3e-121 439.1 328 68.9
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.4e-121 438.0 322 70.8
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 7.4e-121 438.0 318 68.6
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 9.6e-121 437.6 325 70.5
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 9.6e-121 437.6 327 70.3
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.3e-120 437.2 324 70.4
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 1.6e-120 436.8 327 70.0
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 2.1e-120 436.4 325 70.5
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 2.1e-120 436.4 324 70.1
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 2.1e-120 436.4 348 67.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 2.1e-120 436.4 323 71.2
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 2.1e-120 436.4 323 70.3
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.8e-120 436.0 324 70.4
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 2.8e-120 436.0 328 70.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 2.8e-120 436.0 325 69.5
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 4.8e-120 435.3 323 68.7
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 4.8e-120 435.3 323 69.7
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.1e-119 434.1 319 71.2
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 1.4e-119 433.7 321 70.7
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.4e-119 433.7 328 69.5
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 1.4e-119 433.7 320 68.1
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.8e-119 433.3 323 67.8
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 2.4e-119 433.0 321 71.0
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 3.1e-119 432.6 332 69.0
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 4.0e-119 432.2 321 68.2
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.3e-119 431.8 324 69.8
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.3e-119 431.8 325 70.5
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 5.3e-119 431.8 317 68.8
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 6.9e-119 431.4 331 67.7
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 9.0e-119 431.0 331 68.0
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 9.0e-119 431.0 318 70.1
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.5e-118 430.3 322 69.6
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.6e-118 429.5 328 68.3
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 4.5e-118 428.7 331 67.1
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 4.5e-118 428.7 328 67.7
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.5e-118 428.7 322 69.6
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.3e-117 427.2 348 66.7
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 2.2e-117 426.4 322 70.5
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 2.9e-117 426.0 324 68.5
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 6.4e-117 424.9 318 68.9
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.4e-116 423.7 318 68.6
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.4e-116 422.9 323 68.4
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 5.5e-116 421.8 325 67.7
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 5.5e-116 421.8 324 67.9
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 7.1e-116 421.4 318 68.6
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.2e-115 420.6 318 68.2
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 6.0e-115 418.3 359 62.4
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 7.9e-115 417.9 286 73.4
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.0e-114 417.5 323 65.9
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 3.3e-113 412.5 382 57.9
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 7.4e-113 411.4 323 65.3
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 3.1e-111 406.0 324 66.0
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 4.2e-108 395.6 331 63.1
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.0e-106 391.0 499 47.1
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.5e-105 387.1 262 71.8
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 3.3e-105 386.0 314 65.0
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 1.3e-104 384.0 259 72.6
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.6e-104 383.6 261 71.6
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 9.0e-103 377.9 285 68.1
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.5e-102 375.6 191 99.0
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 7.9e-99 364.8 324 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.4e-82 310.8 339 48.7
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.8e-82 310.5 199 77.9
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.5e-81 307.4 182 84.1
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 2.6e-81 306.6 259 56.4
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 2.2e-77 293.5 175 82.9
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 3.8e-77 292.7 167 85.0
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.5e-76 290.8 175 81.1
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 7.5e-73 278.5 167 81.4
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.8e-66 257.3 205 65.4
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 7.3e-52 208.8 186 62.9
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.6e-51 207.6 122 84.4
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 4.4e-49 199.5 216 54.2
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.4e-49 199.5 130 75.4
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 3.2e-47 193.4 163 58.3
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.7e-46 190.3 118 78.8
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.0e-45 186.8 119 77.3
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.8e-43 180.3 112 77.7
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.0e-38 164.1 120 71.7
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-35 154.8 97 80.4
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.5e-30 136.7 151 53.0
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 7.8e-22 109.0 71 76.1
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 3.5e-14 83.6 133 41.4
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 1.1e-12 78.6 158 34.8
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 9.6e-12 75.5 55 63.6
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 2.4e-10 70.9 178 28.7
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 4.5e-09 66.6 180 32.8
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 4.5e-09 66.6 153 32.7
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 8.4e-08 62.4 158 32.3
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.9e-07 61.2 178 30.3
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.4e-07 60.8 50 60.0
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 2.7e-06 57.4 152 30.3


User provided reference genes

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