Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0081700 Salix brachista HOM05D004160 ORTHO05D004757 2.5e-131 472.2 262 100.0
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 7.4e-83 311.2 263 69.6
Potri.005G157500 Populus trichocarpa HOM05D004160 ORTHO05D004757 1.0e-76 290.8 261 65.9
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 1.2e-64 250.8 262 56.5
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 3.5e-64 249.2 262 56.5
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 4.7e-61 238.8 271 59.8
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 4.7e-61 238.8 261 58.2
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 6.8e-60 235.0 241 58.1
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 1.5e-59 233.8 261 57.5
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 5.7e-59 231.9 261 53.6
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 1.7e-58 230.3 244 55.7
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 2.8e-58 229.6 261 56.7
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 2.8e-58 229.6 246 55.3
Gorai.009G230600 Gossypium raimondii HOM05D004160 ORTHO05D004757 4.8e-58 228.8 282 52.8
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 6.3e-58 228.4 244 55.3
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 8.3e-58 228.0 261 53.3
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 8.3e-58 228.0 250 55.6
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 1.1e-57 227.6 262 58.0
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 5.4e-57 225.3 261 52.5
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 7.0e-57 224.9 239 56.5
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 7.0e-57 224.9 265 54.0
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 2.7e-56 223.0 239 56.5
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 7.7e-56 221.5 240 55.0
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 7.7e-56 221.5 245 53.9
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 7.7e-56 221.5 281 50.5
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 7.7e-56 221.5 239 56.1
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 7.7e-56 221.5 267 55.1
Gohir.A05G220700 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.0e-55 221.1 267 51.7
Gohir.D05G223500 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.0e-55 221.1 267 52.4
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 1.0e-55 221.1 240 56.2
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 1.0e-55 221.1 261 55.6
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 1.3e-55 220.7 243 53.5
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 1.3e-55 220.7 240 57.9
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 1.7e-55 220.3 239 56.1
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 1.7e-55 220.3 243 53.1
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 3.8e-55 219.2 260 52.3
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 3.8e-55 219.2 260 52.3
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 3.8e-55 219.2 265 56.2
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 3.8e-55 219.2 239 56.9
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 3.8e-55 219.2 271 54.6
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 5.0e-55 218.8 242 55.8
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 6.6e-55 218.4 240 56.2
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 6.6e-55 218.4 267 55.1
LjContig00408g0003189 Lotus japonicus HOM05D004160 ORTHO05D004757 1.9e-54 216.9 248 53.6
Medtr5g065930 Medicago truncatula HOM05D004160 ORTHO05D004757 1.9e-54 216.9 238 58.8
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 1.9e-54 216.9 266 53.8
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 2.5e-54 216.5 240 52.9
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 3.3e-54 216.1 246 57.3
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 9.5e-54 214.5 242 55.8
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 1.2e-53 214.2 261 51.3
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.2e-53 214.2 263 53.6
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 1.2e-53 214.2 243 51.9
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 1.6e-53 213.8 240 54.6
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 2.8e-53 213.0 246 54.1
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 2.8e-53 213.0 240 53.3
Sabra05G0120500 Salix brachista HOM05D004160 ORTHO05D004757 2.8e-53 213.0 230 58.7
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 3.6e-53 212.6 252 54.8
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 3.6e-53 212.6 263 53.6
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 4.7e-53 212.2 261 53.6
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 4.7e-53 212.2 243 55.1
Lsat_1_v5_gn_1_1800 Lactuca sativa HOM05D004160 ORTHO05D004757 6.1e-53 211.8 245 55.5
arahy.Tifrunner.gnm1.ann1.GVS2KG Arachis hypogaea HOM05D004160 ORTHO05D004757 1.0e-52 211.1 243 53.1
ECA247G3853 Erigeron canadensis HOM05D004160 ORTHO05D004757 1.0e-52 211.1 241 53.5
arahy.Tifrunner.gnm1.ann1.RJ93MJ Arachis hypogaea HOM05D004160 ORTHO05D004757 1.4e-52 210.7 243 53.1
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 1.8e-52 210.3 267 52.4
HanXRQChr02g0047531 Helianthus annuus HOM05D004160 ORTHO05D004757 3.0e-52 209.5 250 53.2
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 6.8e-52 208.4 262 53.4
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 8.9e-52 208.0 239 52.7
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 8.9e-52 208.0 261 51.7
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 2.0e-51 206.8 240 53.8
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 3.4e-51 206.1 263 50.2
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 5.7e-51 205.3 252 50.4
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.3e-50 204.1 238 54.2
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 1.3e-50 204.1 268 48.5
Nn5g29924 Nelumbo nucifera HOM05D004160 ORTHO05D004757 1.7e-50 203.8 265 50.9
MBI06_g36045_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 2.8e-50 203.0 236 54.7
TAR625G1241 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.8e-50 203.0 261 51.0
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 1.4e-49 200.7 261 49.0
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 2.4e-49 199.9 264 48.1
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 4.1e-49 199.1 261 46.7
Sed0023007 Sechium edule HOM05D004160 ORTHO05D004757 4.1e-49 199.1 261 50.2
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 7.0e-49 198.4 241 51.0
Aqoxy5G01323 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 9.2e-49 198.0 245 51.0
Thhalv10026080m.g Eutrema salsugineum HOM05D004160 ORTHO05D004757 2.7e-48 196.4 264 47.7
AT5G49710 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 3.5e-48 196.1 251 48.2
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 4.5e-48 195.7 169 63.3
THA.LOC104800042 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 4.5e-48 195.7 264 49.2
CsaV3_2G030410 Cucumis sativus L. HOM05D004160 ORTHO05D004757 5.9e-48 195.3 262 51.5
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 2.3e-47 193.4 214 56.5
AUR62019025 Chenopodium quinoa HOM05D004160 ORTHO05D004757 3.9e-47 192.6 238 50.8
Duzib093G1656 Durio zibethinus HOM05D004160 ORTHO05D004757 5.0e-47 192.2 267 50.9
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 8.6e-47 191.4 236 50.8
AL8G23640 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 1.5e-46 190.7 248 47.2
Sp7g22590 Schrenkiella parvula HOM05D004160 ORTHO05D004757 1.5e-46 190.7 266 45.5
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 1.9e-46 190.3 241 49.8
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 2.5e-46 189.9 239 51.0
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 3.3e-46 189.5 238 48.3
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 3.3e-46 189.5 262 52.7
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 3.3e-46 189.5 236 50.0
Oeu011647.1 Olea europaea HOM05D004160 ORTHO05D004757 3.3e-46 189.5 241 49.0
SalBow1G6265 Salvia bowleyana HOM05D004160 ORTHO05D004757 3.3e-46 189.5 238 50.0
Sed0000869 Sechium edule HOM05D004160 ORTHO05D004757 3.3e-46 189.5 261 48.7
Carub.0008s0959 Capsella rubella HOM05D004160 ORTHO05D004757 5.6e-46 188.7 253 46.2
DCAR_012861 Daucus carota HOM05D004160 ORTHO05D004757 7.3e-46 188.3 268 46.6
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 1.2e-45 187.6 249 49.0
AUR62027862 Chenopodium quinoa HOM05D004160 ORTHO05D004757 1.6e-45 187.2 238 48.7
TAR381G1580 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.1e-45 186.8 251 51.0
C07p53710 Brassica napus HOM05D004160 ORTHO05D004757 3.6e-45 186.0 264 46.2
AT4G24590 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 1.0e-44 184.5 261 45.6
CDE08G0105 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.4e-44 184.1 262 43.9
Carub.0007s1648 Capsella rubella HOM05D004160 ORTHO05D004757 1.8e-44 183.7 263 45.6
CARHR231990 Cardamine hirsuta HOM05D004160 ORTHO05D004757 2.3e-44 183.3 261 46.4
vmacro04668 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 2.3e-44 183.3 351 38.5
EL10Ac1g01077 Beta vulgaris HOM05D004160 ORTHO05D004757 5.2e-44 182.2 246 52.0
BraA03t14616Z Brassica rapa HOM05D004160 ORTHO05D004757 5.2e-44 182.2 265 46.0
BcaC06g32873 Brassica carinata HOM05D004160 ORTHO05D004757 6.8e-44 181.8 261 46.0
AL7G28600 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 9.8e-43 177.9 261 44.8
BolC7t45862H Brassica oleracea HOM05D004160 ORTHO05D004757 1.3e-42 177.6 266 45.1
BcaNung04961 Brassica carinata HOM05D004160 ORTHO05D004757 1.7e-42 177.2 266 45.1
CiPaw.07G167300 Carya illinoinensis HOM05D004160 ORTHO05D004757 2.2e-42 176.8 186 59.1
HPP92_002309 Vanilla planifolia HOM05D004160 ORTHO05D004757 3.2e-41 172.9 240 45.8
CDE06G1108 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 4.1e-41 172.6 262 43.9
A03p55420 Brassica napus HOM05D004160 ORTHO05D004757 3.5e-40 169.5 264 43.9
Os02g0781700 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 1.3e-39 167.5 272 44.9
C01p19930 Brassica napus HOM05D004160 ORTHO05D004757 3.9e-39 166.0 264 42.8
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 5.0e-39 165.6 236 45.8
BolC1t01921H Brassica oleracea HOM05D004160 ORTHO05D004757 5.0e-39 165.6 268 43.3
ClCG08G011790 Citrullus lanatus HOM05D004160 ORTHO05D004757 5.0e-39 165.6 310 41.6
Hund16867 Selenicereus undatus HOM05D004160 ORTHO05D004757 8.6e-39 164.9 238 45.8
PSO541G4918 Papaver somniferum HOM05D004160 ORTHO05D004757 1.1e-38 164.5 254 41.7
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 1.1e-38 164.5 257 44.0
SEGI_35412 Sequoiadendron giganteum HOM05D004160 ORTHO05D004757 2.5e-38 163.3 272 42.3
BraA08t34092Z Brassica rapa HOM05D004160 ORTHO05D004757 4.3e-38 162.5 246 43.9
Dinv44844 Davidia involucrata HOM05D004160 ORTHO05D004757 4.3e-38 162.5 187 54.0
A01p15950 Brassica napus HOM05D004160 ORTHO05D004757 1.6e-37 160.6 261 42.9
BraA01t01529Z Brassica rapa HOM05D004160 ORTHO05D004757 2.1e-37 160.2 262 42.7
PSO675G9245 Papaver somniferum HOM05D004160 ORTHO05D004757 1.4e-36 157.5 241 44.0
BcaB03g12437 Brassica carinata HOM05D004160 ORTHO05D004757 3.1e-36 156.4 252 42.1
SGA_v2.0_scaffold15G07419 Striga asiatica HOM05D004160 ORTHO05D004757 2.6e-35 153.3 237 46.0
BcaC09g50849 Brassica carinata HOM05D004160 ORTHO05D004757 4.4e-35 152.5 261 42.1
Manes.18G060500 Manihot esculenta HOM05D004160 ORTHO05D004757 9.8e-35 151.4 202 50.5
Oeu012754.1 Olea europaea HOM05D004160 ORTHO05D004757 9.8e-35 151.4 241 44.8
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 2.2e-34 150.2 256 42.2
Zm00001eb101080 Zea mays HOM05D004160 ORTHO05D004757 2.9e-34 149.8 267 40.1
A08p21430 Brassica napus HOM05D004160 ORTHO05D004757 3.7e-34 149.4 248 41.5
FvH4_5g35650 Fragaria vesca HOM05D004160 ORTHO05D004757 4.9e-34 149.1 190 53.2
BcaC07g38165 Brassica carinata HOM05D004160 ORTHO05D004757 1.4e-33 147.5 246 41.9
ATR0022G063 Amborella trichopoda HOM05D004160 ORTHO05D004757 7.1e-33 145.2 176 52.3
BolC8t48579H Brassica oleracea HOM05D004160 ORTHO05D004757 1.6e-32 144.1 236 41.9
Zm00001eb315410 Zea mays HOM05D004160 ORTHO05D004757 1.3e-31 141.0 181 48.6
Phvul.009G143600 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 1.7e-31 140.6 159 55.3
CARHR259070 Cardamine hirsuta HOM05D004160 ORTHO05D004757 2.5e-30 136.7 169 50.3
MELO3C011103.2 Cucumis melo HOM05D004160 ORTHO05D004757 2.5e-30 136.7 187 49.7
Os09g0465500 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 2.4e-25 120.2 174 42.0
MBI02_g09036_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 1.2e-24 117.9 231 39.0
Zm00001eb257060 Zea mays HOM05D004160 ORTHO05D004757 1.9e-22 110.5 199 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 1.2e-19 101.3 257 31.5
SHI28776 Sapria himalayana HOM05D004160 ORTHO05D004757 2.2e-18 97.1 132 43.2
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 4.9e-18 95.9 196 35.7
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 1.1e-17 94.7 176 34.7
Glyma.12G143501 Glycine max HOM05D000739 ORTHO05D004757 4.6e-16 89.4 47 89.4
Pp3c23_8360 Physcomitrium patens HOM05D004160 ORTHO05D004757 9.0e-12 75.1 182 31.9
Zm00001eb015350 Zea mays HOM05D004160 ORTHO05D004757 9.0e-12 75.1 88 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1569 Anthoceros agrestis HOM05D004160 ORTHO05D004757 2.0e-11 73.9 259 28.2
Zm00001eb401670 Zea mays HOM05D004160 ORTHO05D004757 1.3e-10 71.2 45 77.8
CDE06G2402 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.7e-10 70.9 47 61.7
Pp3c8_11730 Physcomitrium patens HOM05D004160 ORTHO05D004757 2.4e-09 67.0 142 31.7
SEGI_02584 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 2.3e-07 60.5 203 27.6
Cc00_g04290 Coffea canephora HOM05D004967 ORTHO05D006146 6.6e-07 58.9 194 26.8
MBI06_g20715_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 9.6e-06 55.1 125 28.0
Zm00001eb054160 Zea mays HOM05D004967 ORTHO05D006146 9.6e-06 55.1 112 29.5


User provided reference genes

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