Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1994.9 1009 100.0
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1895.9 1012 94.8
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1604.7 1008 80.1
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1602.4 1025 78.5
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1598.6 1005 80.7
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1590.1 1008 79.1
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1590.1 1007 78.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1589.7 1011 78.3
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1587.0 1012 78.9
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1581.6 1012 78.7
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1572.0 1005 78.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1555.4 1009 77.4
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1550.0 1015 77.2
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1541.9 1011 76.8
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1540.8 1010 76.4
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1536.5 1007 76.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1532.7 1007 77.1
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1532.7 1006 76.8
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1529.2 1011 76.8
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1524.6 1015 75.6
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1523.1 1018 74.3
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1523.1 1007 75.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1522.3 1013 76.1
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1520.8 1018 74.3
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1520.8 1019 75.3
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1520.4 965 79.2
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1519.6 1018 74.2
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1517.3 1025 74.8
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1517.3 1007 75.4
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1513.8 1011 75.6
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1512.3 1013 75.2
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1508.8 1013 75.5
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1508.4 1032 73.7
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1502.6 1009 75.1
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1496.5 1032 73.2
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1490.3 1043 72.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1489.2 1011 75.4
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1488.4 1009 74.6
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1487.2 1025 73.3
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1480.3 1007 74.4
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1477.6 1011 73.3
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1477.6 1016 73.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1476.8 1015 74.4
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1475.7 1012 73.0
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1053 71.4
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1014 74.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1472.6 1012 73.5
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1472.6 1011 74.8
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1471.4 1015 73.9
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1470.7 1016 73.6
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1467.2 1017 73.7
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1465.3 1030 72.6
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1462.6 1016 73.8
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1016 73.8
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1016 73.8
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1461.8 1016 73.8
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1460.3 1037 71.6
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1460.3 1016 73.4
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1457.6 1016 73.6
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1456.0 1009 72.7
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1454.1 1010 72.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1453.3 1009 72.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1449.9 1040 70.9
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1033 71.2
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1442.2 1014 72.5
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1440.2 1011 72.5
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1440.2 974 75.5
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1009 72.6
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1088 69.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1435.6 1045 70.3
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 969 75.9
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 930 78.1
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1009 72.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1013 71.3
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1010 72.4
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 1028 71.2
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 982 72.9
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1399.0 1018 69.8
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 1009 71.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1392.1 1026 68.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1017 68.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1384.0 1010 69.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1377.1 1017 69.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1374.0 1109 66.3
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1363.6 1020 68.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1356.3 1004 68.9
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1354.0 1004 69.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1345.9 1011 68.6
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 982 70.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1335.9 1043 66.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1333.5 1015 68.0
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1328.5 1031 66.7
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 984 69.1
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1317.0 1008 67.9
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1311.6 1012 68.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1310.4 1012 66.1
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1304.3 1027 66.1
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1289.2 968 68.9
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1285.8 1013 66.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 1146 59.7
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1280.4 1040 64.3
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1275.8 1010 66.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1264.6 920 70.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1263.8 859 75.0
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1260.0 1178 57.8
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1259.6 1005 65.6
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1252.3 951 68.2
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1245.3 1042 63.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1239.9 1012 64.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1238.8 1014 63.6
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1238.8 1011 65.0
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1236.9 1002 62.7
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1220.3 1019 62.2
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1205.3 1014 60.9
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1197.6 1019 62.1
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1163.3 988 63.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1146.7 863 69.1
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1143.3 940 62.7
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1140.9 912 66.2
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1121.7 807 71.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.4e-301 1038.5 947 58.5
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.8e-284 981.9 877 60.3
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.2e-276 956.1 1037 51.1
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.5e-272 943.3 785 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.6e-269 932.6 1039 49.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 2.9e-268 929.1 625 76.5
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 8.7e-265 917.5 629 74.7
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.6e-255 886.7 985 49.2
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.0e-248 863.2 645 69.9
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.3e-239 833.9 1018 46.9
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.7e-239 833.6 1018 46.4
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 4.4e-232 808.9 622 67.4
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.7e-226 789.6 1230 40.8
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.6e-216 756.5 885 45.1
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 4.7e-186 656.0 392 83.2
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.1e-179 634.8 360 84.7
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 4.3e-171 606.3 390 79.0
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-157 560.1 431 69.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 4.3e-155 553.1 462 65.8
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.4e-153 547.4 556 53.6
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-149 534.6 534 55.2
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.4e-105 387.9 238 80.7
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.4e-105 387.9 205 87.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.9e-102 378.3 257 75.1
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 5.2e-100 370.2 289 67.1
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 5.4e-89 333.6 240 70.0
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-84 318.2 233 73.4
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 3.7e-82 310.8 845 30.1
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.3e-79 301.6 162 85.8
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.4e-74 283.5 150 87.3
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 3.1e-60 238.0 173 65.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 7.1e-57 226.9 239 55.6
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.1e-55 220.7 263 51.0
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.4e-49 202.6 148 74.3
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.2e-49 201.4 114 77.2
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 5.6e-46 190.7 500 30.2
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.5e-41 175.3 201 52.2
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 7.1e-41 173.7 155 56.8
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.1e-39 167.5 90 80.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.3e-38 164.9 120 70.8
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 4.6e-32 144.4 77 83.1
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.9e-32 143.7 79 79.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 9.7e-30 136.7 130 58.5
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 2.7e-24 118.6 79 72.2
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.0e-23 115.2 96 60.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.1e-23 114.4 129 51.2
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.5e-22 112.1 98 59.2
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.5e-22 112.1 98 59.2
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.3e-21 109.8 80 68.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.6e-16 92.8 137 47.4
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 6.1e-16 90.9 69 58.0
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 6.3e-13 80.9 80 57.5
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.5e-11 74.7 50 70.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 5.5e-09 67.8 65 50.8
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 1.4e-07 63.2 72 51.4


User provided reference genes

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