Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.0e-242 842.0 424 100.0
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 6.4e-201 704.1 390 90.0
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.1e-188 660.6 396 83.6
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.6e-186 655.6 394 83.5
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.5e-167 592.0 388 76.0
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 7.6e-162 574.3 388 72.9
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 8.4e-161 570.9 383 73.6
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.0e-159 564.7 395 73.2
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.0e-159 564.7 342 79.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 7.9e-159 564.3 358 76.5
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.8e-158 563.1 396 73.2
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.1e-157 560.5 378 75.1
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.1e-155 553.9 389 72.0
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.1e-155 553.9 389 71.2
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.4e-155 553.5 399 68.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 3.1e-155 552.4 392 71.4
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 3.1e-155 552.4 385 71.7
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 5.8e-154 548.1 343 76.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 7.6e-154 547.7 412 70.1
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.3e-153 547.0 376 71.8
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.7e-153 546.6 398 69.3
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.7e-153 546.6 359 73.3
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.7e-153 546.6 386 70.5
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.9e-153 545.8 344 76.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.5e-153 544.7 391 72.1
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 6.5e-153 544.7 391 72.1
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 6.5e-153 544.7 358 73.5
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.4e-152 543.5 357 71.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.5e-152 542.7 391 71.9
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 3.2e-152 542.3 396 69.2
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 4.2e-152 542.0 401 69.8
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.2e-152 542.0 342 77.2
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 7.1e-152 541.2 343 76.7
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 7.1e-152 541.2 400 68.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.2e-151 540.4 386 72.5
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 2.7e-151 539.3 396 70.7
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 3.0e-150 535.8 386 71.5
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.9e-150 535.4 335 77.3
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.7e-150 534.6 342 74.9
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 8.7e-150 534.3 358 73.5
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.5e-149 533.5 385 72.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.9e-149 533.1 396 69.9
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.5e-149 532.7 387 71.1
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 3.3e-149 532.3 357 72.5
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 4.3e-149 531.9 393 69.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 4.3e-149 531.9 393 69.0
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 5.7e-149 531.6 395 69.1
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 5.7e-149 531.6 387 68.7
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.4e-149 531.2 337 74.2
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 7.4e-149 531.2 385 69.9
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.3e-148 530.4 393 68.7
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.6e-148 530.0 393 69.2
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-148 529.6 382 72.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-148 529.6 395 69.9
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.8e-148 529.3 352 73.3
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 4.8e-148 528.5 392 68.9
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.3e-148 528.1 355 73.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.8e-147 526.6 395 69.4
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 4.1e-147 525.4 389 68.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.1e-147 525.4 389 68.9
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 5.3e-147 525.0 352 70.2
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.5e-146 523.5 358 71.8
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.0e-146 523.1 379 68.1
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.7e-145 520.0 394 69.5
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 2.5e-144 516.2 390 67.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 2.5e-144 516.2 390 67.7
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 2.5e-144 516.2 396 66.9
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.6e-143 513.5 360 70.0
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.1e-143 513.1 386 66.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.7e-143 512.7 386 66.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 4.6e-143 511.9 360 69.2
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.6e-143 511.9 384 66.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 5.1e-142 508.4 360 69.4
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.1e-141 507.3 413 62.2
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.1e-141 507.3 400 64.8
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 3.3e-141 505.8 391 64.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 7.4e-141 504.6 394 66.5
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 7.4e-141 504.6 358 69.3
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 9.7e-141 504.2 357 69.5
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.7e-140 503.4 339 72.3
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.7e-140 503.4 357 69.5
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.1e-139 500.7 342 71.6
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.1e-139 498.8 332 71.4
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 5.3e-139 498.4 356 69.7
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 6.9e-139 498.0 387 64.6
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 9.1e-139 497.7 357 68.6
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-138 497.3 359 68.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-138 497.3 359 68.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.5e-138 496.9 339 71.1
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.5e-138 495.4 338 71.9
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.0e-137 494.2 390 63.6
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.7e-137 493.4 392 64.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.9e-137 492.7 342 71.6
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.5e-137 491.5 357 68.3
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 8.5e-137 491.1 318 73.3
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 4.2e-136 488.8 333 71.5
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 4.2e-136 488.8 340 68.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.2e-136 488.8 372 66.4
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 7.2e-136 488.0 390 65.6
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.7e-135 486.1 387 63.8
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 7.9e-135 484.6 358 65.6
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.6e-133 479.6 389 63.0
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 3.3e-133 479.2 345 67.2
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 9.7e-133 477.6 380 62.9
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 9.7e-133 477.6 342 68.4
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.3e-132 477.2 367 65.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.4e-131 473.0 307 73.3
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 3.1e-131 472.6 374 63.9
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 9.1e-131 471.1 344 68.0
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 5.9e-130 468.4 341 68.3
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.0e-129 467.6 379 62.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 8.5e-129 464.5 398 59.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.4e-128 461.1 392 62.2
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.7e-127 459.5 308 71.4
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.2e-122 444.1 376 61.4
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.1e-119 433.3 358 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 2.7e-119 433.0 386 58.0
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 3.3e-117 426.0 366 59.3
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.7e-117 425.2 321 67.6
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 9.7e-117 424.5 343 61.2
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-116 423.3 284 72.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 2.0e-114 416.8 392 57.1
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.5e-114 416.0 297 66.3
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.3e-113 414.1 342 59.1
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 5.2e-110 402.1 339 59.6
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.8e-110 401.7 230 81.3
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.2e-108 396.7 324 59.0
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.5e-104 384.0 381 55.6
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.3e-104 382.9 355 53.5
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.8e-102 377.1 300 64.7
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 8.6e-97 358.2 204 81.4
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 5.6e-96 355.5 313 59.4
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.8e-94 348.6 210 78.6
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.5e-88 330.9 197 78.2
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.2e-87 327.8 234 70.5
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.7e-82 310.1 220 70.5
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.9e-80 303.9 178 81.5
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.9e-80 303.9 231 65.4
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 6.8e-78 295.4 262 55.3
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.3e-73 281.2 395 38.2
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 7.3e-72 275.4 302 44.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.8e-70 270.8 228 60.1
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 3.1e-70 270.0 342 42.1
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 3.0e-65 253.4 220 58.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.6e-65 252.3 207 60.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 6.2e-55 219.2 383 34.5
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.1e-50 204.1 360 35.6
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 9.6e-48 195.3 226 51.3
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.9e-44 183.0 126 72.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.9e-30 136.0 148 50.0
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.0e-29 134.4 135 53.3
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.7e-29 132.5 116 56.0
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-22 110.9 63 81.0
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 2.5e-19 100.9 56 80.4


User provided reference genes

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