Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.7e-191 671.4 340 100.0
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.5e-163 577.8 340 87.1
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 9.1e-158 560.5 340 83.8
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 3.4e-136 488.8 337 73.3
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 5.6e-131 471.5 323 74.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 5.6e-131 471.5 339 71.1
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.5e-128 463.4 325 72.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 6.4e-127 458.0 336 70.2
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 4.1e-126 455.3 325 71.4
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.1e-125 453.0 341 69.2
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 6.0e-125 451.4 344 67.7
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 6.0e-125 451.4 328 70.7
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 6.0e-125 451.4 328 69.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.3e-124 449.5 340 68.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 2.3e-124 449.5 324 72.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 2.3e-124 449.5 328 69.5
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 3.0e-124 449.1 335 68.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 3.9e-124 448.7 321 72.9
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 5.1e-124 448.4 328 69.5
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.3e-123 445.3 332 69.3
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.6e-122 443.4 321 71.7
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.3e-121 439.5 339 67.6
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.2e-120 437.2 338 65.4
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.5e-120 436.8 337 66.8
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.6e-120 436.0 328 67.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.6e-120 436.0 336 67.9
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 9.9e-120 434.1 325 68.0
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.3e-119 433.7 315 69.5
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.2e-119 433.0 335 67.8
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.4e-118 430.3 330 67.3
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.4e-118 429.5 342 64.0
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.4e-118 429.5 338 64.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 3.2e-118 429.1 337 66.2
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.2e-118 429.1 337 66.2
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 4.6e-117 425.2 334 64.7
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.0e-116 424.1 336 66.4
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.0e-116 424.1 342 65.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.7e-116 423.3 335 63.9
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.7e-116 423.3 337 64.7
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 3.0e-116 422.5 340 62.4
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 3.0e-116 422.5 339 64.6
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 6.6e-116 421.4 329 66.3
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.6e-116 421.0 327 66.1
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.5e-115 420.2 334 64.4
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.9e-115 419.9 339 62.8
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 2.5e-115 419.5 334 64.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 3.3e-115 419.1 340 64.4
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 3.3e-115 419.1 340 64.4
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.6e-115 418.3 337 63.2
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.6e-115 418.3 337 64.7
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 9.6e-115 417.5 337 65.3
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 9.6e-115 417.5 342 62.9
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.6e-114 416.8 327 65.4
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 1.6e-114 416.8 340 63.5
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.8e-114 416.0 327 65.4
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.2e-114 414.8 319 65.8
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.1e-114 414.5 336 66.1
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.1e-113 414.1 334 63.2
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.1e-113 414.1 340 62.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.8e-113 413.3 339 64.6
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 2.4e-113 412.9 333 63.7
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 6.8e-113 411.4 326 62.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.6e-112 409.5 355 62.3
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.4e-112 409.1 336 62.8
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 4.4e-112 408.7 374 58.3
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 7.6e-112 407.9 333 63.1
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.3e-111 407.1 361 61.5
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.7e-111 406.8 288 71.5
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.7e-111 406.8 338 61.5
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.9e-111 406.0 363 60.9
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.9e-111 406.0 326 63.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 6.4e-111 404.8 334 63.5
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.9e-110 403.3 362 60.5
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.2e-110 402.5 328 63.4
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 3.2e-110 402.5 338 61.2
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.4e-110 401.7 349 61.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.7e-109 399.4 321 62.9
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 6.0e-109 398.3 289 70.2
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 3.9e-108 395.6 325 60.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 6.6e-108 394.8 322 63.4
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.1e-107 394.0 325 62.5
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.9e-107 393.3 324 61.7
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-107 393.3 329 64.4
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.5e-107 392.9 325 62.5
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 3.3e-107 392.5 326 60.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.3e-107 392.1 409 54.8
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 7.3e-107 391.3 344 61.3
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.3e-106 390.6 290 67.9
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.1e-106 389.8 337 61.1
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 3.6e-106 389.0 287 67.9
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 3.6e-106 389.0 287 68.3
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 6.2e-106 388.3 322 61.8
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.1e-105 387.5 322 61.8
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.4e-105 387.1 336 61.9
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 5.3e-105 385.2 306 64.7
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-104 383.6 287 66.6
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.6e-104 382.9 322 61.2
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.6e-104 381.3 325 60.9
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.3e-103 380.6 307 64.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 2.9e-103 379.4 324 63.0
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 4.9e-103 378.6 350 57.4
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 8.4e-103 377.9 328 60.4
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.4e-102 376.3 292 66.1
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.6e-101 373.6 325 59.7
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 4.6e-101 372.1 321 59.8
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.5e-99 366.3 321 58.9
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.6e-96 356.3 327 57.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.6e-96 354.8 324 59.0
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 8.4e-95 351.3 335 59.1
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 2.4e-94 349.7 266 68.0
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 5.4e-94 348.6 262 66.0
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.6e-93 347.1 323 57.0
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.1e-93 346.7 318 56.3
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 4.6e-93 345.5 321 53.3
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.3e-92 344.0 253 66.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.3e-92 343.2 321 55.1
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.1e-92 342.0 329 57.4
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 3.3e-91 339.3 318 57.5
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 9.6e-91 337.8 325 59.1
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.8e-90 335.5 332 56.3
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.2e-90 335.1 327 53.8
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 3.8e-87 325.9 330 52.7
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-86 322.0 328 54.6
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.5e-83 313.9 246 66.7
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.2e-79 300.1 475 42.1
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 2.9e-79 299.7 247 61.1
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.5e-75 286.6 327 51.7
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 5.9e-72 275.4 213 65.7
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.1e-69 266.9 323 46.4
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 6.7e-68 261.9 173 77.5
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 5.0e-63 245.7 198 65.2
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 7.2e-62 241.9 225 59.1
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 4.7e-61 239.2 378 40.5
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.7e-59 232.3 179 65.9
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 3.1e-57 226.5 190 62.6
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 5.3e-57 225.7 236 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.5e-56 224.2 208 56.7
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.5e-56 224.2 200 59.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.5e-56 224.2 321 43.9
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.5e-56 223.0 182 62.1
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 3.5e-56 223.0 147 72.1
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.5e-56 223.0 283 46.3
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 4.5e-56 222.6 231 53.7
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.1e-53 213.8 192 60.4
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.7e-50 204.1 247 49.8
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.4e-49 200.3 144 70.1
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.6e-48 197.6 198 55.1
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 3.5e-48 196.4 132 73.5
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 5.9e-48 195.7 300 39.3
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 7.7e-48 195.3 151 64.2
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.8e-47 193.0 333 41.4
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.5e-46 191.0 140 65.7
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.6e-45 186.4 233 45.5
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.0e-40 170.6 149 58.4
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 7.7e-40 168.7 121 67.8
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 3.2e-38 163.3 117 68.4
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 4.0e-36 156.4 185 44.9
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.7e-31 141.0 106 68.9
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.8e-31 139.8 196 44.4
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 8.3e-26 122.1 156 47.4
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.4e-25 120.6 117 53.0
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.6e-24 117.9 122 51.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 3.5e-24 116.7 125 54.4
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.5e-19 101.3 84 63.1
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 2.6e-19 100.5 84 60.7
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.4e-19 99.8 67 70.1
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 1.6e-13 81.3 88 50.0
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.0e-12 76.6 92 45.7
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-11 75.1 66 59.1
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.0e-11 74.3 45 77.8
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 1.3e-10 71.6 66 59.1
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 7.1e-09 65.9 56 60.7
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 7.1e-09 65.9 53 58.5


User provided reference genes

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