Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.9e-247 859.0 518 100.0
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.3e-208 729.9 523 86.2
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.3e-155 553.9 595 66.4
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 4.2e-154 548.9 569 62.9
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 4.2e-146 522.3 470 69.4
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.2e-134 483.4 483 61.3
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.5e-123 445.3 483 57.6
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.1e-122 444.5 477 57.7
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 2.5e-122 443.4 499 60.1
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.5e-119 434.1 478 60.5
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 3.3e-119 433.0 483 56.5
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 9.7e-119 431.4 477 59.5
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 3.1e-117 426.4 483 60.0
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 9.1e-117 424.9 507 54.0
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 2.7e-113 413.3 482 58.9
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.0e-112 409.8 497 57.9
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 3.0e-112 409.8 486 57.6
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 9.8e-111 404.8 504 55.6
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.2e-110 403.7 501 56.9
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.4e-109 400.2 470 55.5
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.4e-109 400.2 496 55.4
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 4.1e-109 399.4 480 58.5
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 4.5e-108 396.0 483 54.0
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.3e-107 393.7 497 56.9
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.9e-107 393.3 475 57.7
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 6.5e-107 392.1 497 55.5
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 7.2e-106 388.7 461 56.6
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.4e-104 384.4 494 56.5
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 2.3e-104 383.6 470 56.8
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 8.8e-104 381.7 466 54.1
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.2e-103 381.3 473 55.0
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.7e-100 370.2 455 54.9
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.5e-100 369.8 484 52.7
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 3.5e-100 369.8 454 52.4
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 4.5e-100 369.4 470 54.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 5.9e-100 369.0 485 53.2
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.0e-99 368.2 481 50.5
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.5e-98 364.4 457 56.2
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 9.5e-98 361.7 480 53.5
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.8e-97 360.1 529 51.8
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.1e-97 359.0 475 56.0
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.5e-95 354.4 472 55.7
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 3.7e-94 349.7 485 47.4
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 8.3e-94 348.6 486 52.1
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 1.6e-92 344.4 484 47.1
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.7e-92 343.6 455 51.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.7e-92 343.6 454 51.5
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 2.7e-92 343.6 485 46.8
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 4.6e-92 342.8 489 50.5
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 4.6e-92 342.8 458 50.9
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.7e-91 340.9 480 52.7
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 3.9e-91 339.7 476 52.3
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 6.6e-91 339.0 460 52.4
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 6.6e-91 339.0 628 45.5
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 8.6e-91 338.6 457 51.9
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.5e-90 337.0 407 59.2
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.8e-89 333.6 467 51.0
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.2e-89 332.4 457 49.0
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.1e-85 321.6 438 51.1
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.9e-85 320.9 452 47.6
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.8e-84 315.5 479 49.9
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 1.0e-83 315.1 434 50.2
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 6.6e-83 312.4 469 45.2
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.1e-80 305.1 453 46.1
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.8e-80 304.3 375 57.1
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 3.1e-80 303.5 471 46.3
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 4.0e-80 303.1 466 50.0
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 5.2e-80 302.8 273 67.0
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 6.8e-80 302.4 414 49.0
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 5.8e-79 299.3 462 45.0
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 8.3e-78 295.4 451 47.9
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.1e-77 295.0 462 45.5
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 3.2e-77 293.5 458 47.4
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 7.8e-76 288.9 454 45.4
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 2.3e-75 287.3 414 45.9
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 5.6e-74 282.7 415 48.0
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 2.8e-73 280.4 466 46.4
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.4e-72 278.1 461 45.3
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.8e-72 277.7 445 43.8
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.4e-72 277.3 459 47.3
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 6.8e-72 275.8 435 43.7
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.4e-71 273.5 486 44.0
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 8.4e-70 268.9 488 41.0
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 3.2e-69 266.9 447 46.5
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 4.1e-69 266.5 492 42.9
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 3.0e-67 260.4 452 43.8
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.1e-67 259.6 454 41.9
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.9e-66 257.7 465 43.0
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.5e-66 257.3 458 41.9
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.3e-66 256.5 420 47.6
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.6e-65 254.6 485 41.2
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 1.6e-65 254.6 438 43.2
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.7e-65 253.1 445 45.4
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 4.7e-65 253.1 463 38.9
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.8e-64 251.1 473 40.4
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 5.2e-64 249.6 448 41.3
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 6.9e-64 249.2 436 42.9
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.2e-63 248.4 451 42.6
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.6e-63 247.3 479 40.3
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 2.6e-63 247.3 363 53.2
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 3.4e-63 246.9 453 42.2
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 3.4e-63 246.9 469 39.2
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 8.4e-62 242.3 388 44.8
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 2.1e-60 237.7 361 46.0
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.1e-58 231.9 496 39.9
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.3e-58 230.3 453 38.9
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 7.3e-58 229.2 439 40.3
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 1.3e-57 228.4 490 36.9
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 6.2e-57 226.1 465 38.3
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 9.9e-55 218.8 451 39.0
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 6.7e-43 179.5 177 56.5
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.1e-41 174.5 382 41.6
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 9.0e-40 169.1 255 45.5
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 9.3e-37 159.1 138 68.1
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.7e-33 147.1 335 37.9
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.0e-30 139.0 199 45.2
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.0e-30 136.7 98 71.4
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.5e-29 134.4 152 55.9
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 7.4e-26 122.9 267 37.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 9.7e-26 122.5 295 34.6
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.7e-25 121.7 510 27.8
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.7e-25 121.7 473 30.7
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 3.7e-25 120.6 484 27.5
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.7e-25 120.6 450 28.2
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 4.7e-20 103.6 447 28.0
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.9e-19 100.5 103 53.4
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 2.0e-18 98.2 108 49.1
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.8e-16 91.7 76 61.8
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.8e-16 91.7 355 28.5
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 4.5e-15 87.0 58 74.1
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.0e-11 75.9 442 26.7
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.4e-10 70.5 64 56.2
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.4e-08 65.5 73 49.3
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 4.1e-08 63.9 152 37.5
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 7.0e-08 63.2 57 54.4
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 2.0e-07 61.6 62 50.0
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 1.7e-06 58.5 116 35.3


User provided reference genes

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