Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 8.2e-112 407.1 217 100.0
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.6e-49 199.5 218 52.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.8e-40 169.1 99 82.8
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.9e-36 156.8 99 72.7
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.8e-29 133.7 103 66.0
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.3e-29 133.3 103 63.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.1e-28 131.0 103 63.1
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.6e-27 127.1 99 60.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 3.7e-27 125.9 103 61.2
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.7e-27 125.9 103 61.2
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-26 124.0 103 60.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.4e-26 124.0 103 60.2
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.4e-26 124.0 100 63.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 5.9e-25 118.6 102 60.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 7.6e-25 118.2 104 59.6
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.3e-24 117.5 101 59.4
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.2e-24 116.7 104 58.7
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 9.3e-23 111.3 99 57.6
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.6e-22 110.5 109 54.1
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.6e-22 109.0 97 61.9
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-21 107.5 109 53.2
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.8e-21 107.1 99 55.6
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-21 107.1 107 57.0
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-21 107.1 107 57.0
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.8e-21 107.1 107 57.0
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.0e-21 106.3 110 53.6
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 5.1e-21 105.5 113 49.6
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.1e-21 105.5 101 55.4
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.7e-21 105.1 101 54.5
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 6.7e-21 105.1 100 61.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 8.7e-21 104.8 101 55.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.1e-20 104.4 100 56.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.1e-20 104.4 99 54.5
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 2.5e-20 103.2 101 55.4
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.7e-20 102.1 106 53.8
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 7.4e-20 101.7 99 56.6
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.2e-19 100.1 110 50.9
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 4.8e-19 99.0 214 36.0
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 6.3e-19 98.6 97 54.6
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.4e-18 97.4 105 51.4
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.8e-18 97.1 99 49.5
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.8e-18 97.1 100 50.0
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.8e-18 97.1 99 54.5
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 6.9e-18 95.1 100 55.0
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 9.1e-18 94.7 100 48.0
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 9.1e-18 94.7 100 48.0
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 9.1e-18 94.7 100 48.0
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.2e-17 94.4 99 48.5
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.5e-17 94.0 99 48.5
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.0e-17 93.6 95 51.6
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.0e-17 93.6 95 51.6
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.0e-17 93.6 96 47.9
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 3.4e-17 92.8 101 47.5
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 5.9e-17 92.0 100 47.0
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 5.9e-17 92.0 111 44.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 5.9e-17 92.0 98 54.1
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.0e-16 91.3 163 36.8
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.0e-16 91.3 93 47.3
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-16 90.9 88 55.7
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-16 90.9 100 47.0
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.3e-16 90.9 100 47.0
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.3e-16 90.9 100 48.0
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-16 90.5 101 47.5
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-16 90.5 100 46.0
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 1.7e-16 90.5 101 47.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.7e-16 90.5 100 46.0
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.2e-16 90.1 88 52.3
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 2.2e-16 90.1 108 50.0
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.9e-16 89.7 98 53.1
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.9e-16 89.7 98 53.1
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.9e-16 89.7 98 53.1
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 8.5e-16 88.2 102 46.1
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-15 87.4 164 34.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-15 87.4 164 34.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-15 87.4 164 34.1
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.4e-15 87.4 105 48.6
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-15 87.4 99 49.5
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 3.2e-15 86.3 98 52.0
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.2e-15 86.3 102 48.0
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.2e-15 86.3 97 50.5
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.2e-15 85.9 93 46.2
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 4.2e-15 85.9 164 33.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 5.5e-15 85.5 102 50.0
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 5.5e-15 85.5 105 46.7
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 5.5e-15 85.5 98 43.9
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 7.2e-15 85.1 100 47.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 9.4e-15 84.7 90 46.7
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-14 84.0 99 44.4
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.1e-14 83.6 93 51.6
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.7e-14 83.2 99 44.4
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.6e-14 82.8 101 47.5
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.6e-14 82.8 101 47.5
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.0e-13 81.3 101 46.5
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.0e-13 81.3 101 46.5
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.0e-13 81.3 101 46.5
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.0e-13 81.3 105 44.8
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.4e-13 80.9 99 43.4
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.8e-13 80.5 101 45.5
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.0e-13 79.7 95 51.6
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 8.8e-13 78.2 100 45.0
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.8e-13 78.2 95 49.5
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-12 77.8 95 50.5
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.5e-12 77.4 101 45.5
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 2.0e-12 77.0 99 44.4
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 9.7e-12 74.7 89 43.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-11 74.3 88 46.6
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.7e-11 73.9 94 44.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.7e-11 73.9 121 38.0
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 6.3e-11 72.0 110 41.8
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 8.2e-11 71.6 95 41.1
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.8e-10 70.5 98 39.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.4e-10 70.1 98 42.9
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.1e-10 69.7 78 47.4
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.1e-10 69.3 108 41.7
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 6.9e-10 68.6 122 40.2
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 9.1e-10 68.2 108 39.8
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.1e-10 68.2 93 38.7
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.5e-09 67.4 109 37.6
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.0e-09 67.0 99 38.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.6e-09 66.6 96 40.6
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.6e-09 66.6 115 39.1
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.6e-09 66.6 89 43.8
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 5.9e-09 65.5 100 38.0
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 5.9e-09 65.5 125 40.0
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 5.9e-09 65.5 104 39.4
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 5.9e-09 65.5 79 45.6
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.7e-09 65.1 94 37.2
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.0e-08 64.7 90 36.7
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.3e-08 64.3 101 40.6
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.3e-08 64.3 111 39.6
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-08 64.3 108 38.0
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.3e-08 64.3 101 38.6
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.7e-08 63.9 81 46.9
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.2e-08 63.5 93 38.7
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 2.2e-08 63.5 102 39.2
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 3.8e-08 62.8 96 39.6
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.9e-07 60.5 116 34.5
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.5e-07 60.1 91 41.8
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.5e-07 60.1 90 38.9
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 5.5e-07 58.9 117 32.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 7.2e-07 58.5 105 36.2
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 7.2e-07 58.5 104 37.5
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 9.4e-07 58.2 100 41.0
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.2e-06 57.8 92 38.0
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.2e-06 57.8 109 33.9
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.6e-06 57.4 99 38.4
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.1e-06 57.0 65 44.6
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.6e-06 56.2 82 42.7
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 6.1e-06 55.5 69 43.5
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 6.1e-06 55.5 87 39.1


User provided reference genes

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