Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0062800 Salix brachista HOM05D006174 ORTHO05D007987 6.1e-122 441.0 255 100.0
Potri.002G080300 Populus trichocarpa HOM05D006174 ORTHO05D007987 1.8e-81 306.6 309 67.6
Sabra05G0137100 Salix brachista HOM05D006174 ORTHO05D007987 1.2e-72 277.3 309 63.1
vmacro17639 Vaccinium macrocarpon HOM05D006174 ORTHO05D007987 1.2e-66 257.3 310 58.4
Manes.18G080300 Manihot esculenta HOM05D006174 ORTHO05D007987 4.0e-65 252.3 304 60.2
Prupe.1G492400 Prunus persica HOM05D006174 ORTHO05D007987 6.4e-63 245.0 306 57.5
Dinv14652 Davidia involucrata HOM05D006174 ORTHO05D007987 5.4e-62 241.9 305 54.1
Ciclev10003743m.g Citrus clementina HOM05D006174 ORTHO05D007987 1.2e-61 240.7 310 55.5
RcHm_v2.0_Chr4g0420811 Rosa chinensis HOM05D006174 ORTHO05D007987 2.0e-61 240.0 306 56.2
CiPaw.15G033800 Carya illinoinensis HOM05D006174 ORTHO05D007987 2.7e-61 239.6 304 57.6
Cfa018561 Carpinus fangiana HOM05D006174 ORTHO05D007987 4.6e-61 238.8 301 58.5
FAN27G1425 Fragaria x ananassa HOM05D006174 ORTHO05D007987 7.8e-61 238.0 302 52.3
MD00G1030400 Malus domestica HOM05D006174 ORTHO05D007987 7.8e-61 238.0 304 56.2
Sed0011313 Sechium edule HOM05D006174 ORTHO05D007987 1.3e-60 237.3 304 53.0
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 1.7e-60 236.9 294 57.8
Atru.chr13.1536 Acer truncatum HOM05D006174 ORTHO05D007987 5.0e-60 235.3 306 46.1
CANSAT56G3042 Cannabis sativa HOM05D006174 ORTHO05D007987 8.6e-60 234.6 301 51.8
FAN20G1065 Fragaria x ananassa HOM05D006174 ORTHO05D007987 8.6e-60 234.6 302 56.3
QL09p033206 Quercus lobata HOM05D006174 ORTHO05D007987 8.6e-60 234.6 304 56.9
ClCG11G015920 Citrullus lanatus HOM05D006174 ORTHO05D007987 1.1e-59 234.2 304 57.2
CSS0047085 Camellia sinensis var. sinensis HOM05D006174 ORTHO05D007987 1.9e-59 233.4 305 55.4
CsaV3_5G026160 Cucumis sativus L. HOM05D006174 ORTHO05D007987 1.9e-59 233.4 304 55.9
TAR336G0003 Trochodendron aralioides HOM05D006174 ORTHO05D007987 1.9e-59 233.4 305 55.4
Cpa.g.sc64.130 Carica papaya HOM05D006174 ORTHO05D007987 3.3e-59 232.6 306 55.6
FvH4_2g27550 Fragaria vesca HOM05D006174 ORTHO05D007987 5.6e-59 231.9 302 55.6
TWI34G0515 Tripterygium wilfordii HOM05D006174 ORTHO05D007987 5.6e-59 231.9 306 55.6
FAN15G2863 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.2e-58 230.7 302 55.3
Lalb_Chr17g0343621 Lupinus albus HOM05D006174 ORTHO05D007987 2.1e-58 229.9 303 52.5
PGR044G0496 Punica granatum HOM05D006174 ORTHO05D007987 2.8e-58 229.6 301 54.5
FAN24G3105 Fragaria x ananassa HOM05D006174 ORTHO05D007987 6.2e-58 228.4 302 52.0
QL09p033332 Quercus lobata HOM05D006174 ORTHO05D007987 6.2e-58 228.4 304 56.2
Thecc.08G130300 Theobroma cacao HOM05D006174 ORTHO05D007987 6.2e-58 228.4 300 52.0
MELO3C025482.2 Cucumis melo HOM05D006174 ORTHO05D007987 8.1e-58 228.0 304 52.3
Nn8g40873 Nelumbo nucifera HOM05D006174 ORTHO05D007987 4.0e-57 225.7 301 55.5
Rhsim08G0141900 Rhododendron simsii HOM05D006174 ORTHO05D007987 1.5e-56 223.8 310 43.2
Aqoxy3G03207 Aquilegia oxysepala HOM05D006174 ORTHO05D007987 2.0e-56 223.4 303 49.2
Nn2g10369 Nelumbo nucifera HOM05D006174 ORTHO05D007987 2.0e-56 223.4 311 55.3
Gorai.010G052600 Gossypium raimondii HOM05D006174 ORTHO05D007987 4.4e-56 222.2 300 55.3
Gohir.A06G046700 Gossypium hirsutum HOM05D006174 ORTHO05D007987 9.8e-56 221.1 300 55.7
Gohir.D06G047100 Gossypium hirsutum HOM05D006174 ORTHO05D007987 1.7e-55 220.3 300 55.3
Duzib093G0805 Durio zibethinus HOM05D006174 ORTHO05D007987 2.2e-55 219.9 300 54.3
Actinidia21299 Actinidia chinensis HOM05D006174 ORTHO05D007987 2.9e-55 219.5 295 54.9
CAN.G1352.3 Capsicum annuum HOM05D006174 ORTHO05D007987 3.7e-55 219.2 300 54.7
PSO832G2909 Papaver somniferum HOM05D006174 ORTHO05D007987 4.9e-55 218.8 301 53.5
SHI21567 Sapria himalayana HOM05D006174 ORTHO05D007987 6.4e-55 218.4 305 53.1
AUR62041512 Chenopodium quinoa HOM05D006174 ORTHO05D007987 1.9e-54 216.9 301 51.5
Oeu001538.1 Olea europaea HOM05D006174 ORTHO05D007987 2.4e-54 216.5 302 53.6
Sc14g0003020 Simmondsia chinensis HOM05D006174 ORTHO05D007987 5.4e-54 215.3 301 53.5
DCAR_014377 Daucus carota HOM05D006174 ORTHO05D007987 7.1e-54 214.9 311 51.8
Peaxi162Scf00310g00046 Petunia axillaris HOM05D006174 ORTHO05D007987 9.2e-54 214.5 305 54.1
ECA232G2008 Erigeron canadensis HOM05D006174 ORTHO05D007987 1.2e-53 214.2 304 52.6
Actinidia28258 Actinidia chinensis HOM05D006174 ORTHO05D007987 2.1e-53 213.4 245 62.9
Nitab4.5_0005499g0020 Nicotiana tabacum HOM05D006174 ORTHO05D007987 2.7e-53 213.0 306 52.9
Eucgr.F04334 Eucalyptus grandis HOM05D006174 ORTHO05D007987 4.6e-53 212.2 292 51.4
Nitab4.5_0000111g0120 Nicotiana tabacum HOM05D006174 ORTHO05D007987 4.6e-53 212.2 300 53.3
Lsat_1_v5_gn_4_117540 Lactuca sativa HOM05D006174 ORTHO05D007987 1.0e-52 211.1 301 52.8
PGSC0003DMG400029178 Solanum tuberosum HOM05D006174 ORTHO05D007987 1.3e-52 210.7 301 53.8
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 3.9e-52 209.1 302 49.0
arahy.Tifrunner.gnm1.ann1.I3T0B4 Arachis hypogaea HOM05D006174 ORTHO05D007987 5.1e-52 208.8 304 52.0
Sopen08g010060 Solanum pennellii HOM05D006174 ORTHO05D007987 5.1e-52 208.8 301 53.5
EL10Ac5g12247 Beta vulgaris HOM05D006174 ORTHO05D007987 6.6e-52 208.4 304 50.3
PGSC0003DMG400014838 Solanum tuberosum HOM05D006174 ORTHO05D007987 6.6e-52 208.4 301 52.8
PGSC0003DMG400006019 Solanum tuberosum HOM05D006174 ORTHO05D007987 8.6e-52 208.0 301 53.2
Thhalv10019853m.g Eutrema salsugineum HOM05D006174 ORTHO05D007987 1.1e-51 207.6 305 51.1
AL2G37610 Arabidopsis lyrata HOM05D006174 ORTHO05D007987 4.3e-51 205.7 305 50.8
AT1G77405 Arabidopsis thaliana HOM05D006174 ORTHO05D007987 5.6e-51 205.3 307 50.2
Carub.0002s2430 Capsella rubella HOM05D006174 ORTHO05D007987 5.6e-51 205.3 307 51.5
Solyc08g029150.3 Solanum lycopersicum HOM05D006174 ORTHO05D007987 5.6e-51 205.3 301 52.8
Cc10_g12420 Coffea canephora HOM05D006174 ORTHO05D007987 9.5e-51 204.5 298 51.0
BcaC09g50568 Brassica carinata HOM05D006174 ORTHO05D007987 2.1e-50 203.4 307 49.8
C01p23850 Brassica napus HOM05D006174 ORTHO05D007987 2.1e-50 203.4 307 49.8
BolC1t02330H Brassica oleracea HOM05D006174 ORTHO05D007987 2.1e-50 203.4 307 49.8
HanXRQChr11g0326181 Helianthus annuus HOM05D006174 ORTHO05D007987 2.1e-50 203.4 310 48.1
BcaB05g25044 Brassica carinata HOM05D006174 ORTHO05D007987 4.7e-50 202.2 306 50.3
arahy.Tifrunner.gnm1.ann1.9UW3CC Arachis hypogaea HOM05D006174 ORTHO05D007987 6.2e-50 201.8 304 51.3
CARHR070890 Cardamine hirsuta HOM05D006174 ORTHO05D007987 6.2e-50 201.8 307 50.2
Sp5g32560 Schrenkiella parvula HOM05D006174 ORTHO05D007987 6.2e-50 201.8 303 49.8
Lj1g0022003 Lotus japonicus HOM05D006174 ORTHO05D007987 8.1e-50 201.4 308 51.6
AUR62031996 Chenopodium quinoa HOM05D006174 ORTHO05D007987 3.1e-49 199.5 288 51.0
THA.LOC104800212 Tarenaya hassleriana HOM05D006174 ORTHO05D007987 3.1e-49 199.5 308 51.3
Ah.12g055480 Amaranthus hybridus HOM05D006174 ORTHO05D007987 1.5e-48 197.2 301 51.2
A01p18900 Brassica napus HOM05D006174 ORTHO05D007987 1.5e-48 197.2 307 49.2
SalBow2G2495 Salvia bowleyana HOM05D006174 ORTHO05D007987 1.5e-48 197.2 302 49.7
BraA01t01831Z Brassica rapa HOM05D006174 ORTHO05D007987 2.6e-48 196.4 307 48.9
BcaC03g15734 Brassica carinata HOM05D006174 ORTHO05D007987 7.6e-48 194.9 307 37.1
Aa31LG4G7430 Aethionema arabicum HOM05D006174 ORTHO05D007987 1.7e-47 193.7 307 48.5
ATR0751G052 Amborella trichopoda HOM05D006174 ORTHO05D007987 1.9e-46 190.3 300 47.7
EL10Ac3g06597 Beta vulgaris HOM05D006174 ORTHO05D007987 4.1e-46 189.1 295 50.2
VMungo1080G1789 Vigna mungo HOM05D006174 ORTHO05D007987 1.2e-45 187.6 290 51.4
Migut.N03269 Erythranthe guttata HOM05D006174 ORTHO05D007987 1.6e-45 187.2 307 48.2
TPR.G8620 Trifolium pratense HOM05D006174 ORTHO05D007987 7.8e-45 184.9 313 48.9
Medtr3g108060 Medicago truncatula HOM05D006174 ORTHO05D007987 1.7e-44 183.7 317 46.4
Phvul.001G090600 Phaseolus vulgaris HOM05D006174 ORTHO05D007987 1.7e-44 183.7 298 48.0
SGA_v2.0_scaffold75G24945 Striga asiatica HOM05D006174 ORTHO05D007987 6.6e-44 181.8 306 49.7
Psat1g032920 Pisum sativum HOM05D006174 ORTHO05D007987 1.9e-43 180.3 314 48.1
GSVIVG01008474001 Vitis vinifera HOM05D006174 ORTHO05D007987 5.6e-43 178.7 301 36.9
CAN.G1352.7 Capsicum annuum HOM05D006174 ORTHO05D007987 9.6e-43 177.9 189 68.8
Glyma.19G099200 Glycine max HOM05D006174 ORTHO05D007987 2.1e-42 176.8 300 49.3
HPP92_023516 Vanilla planifolia HOM05D006174 ORTHO05D007987 1.5e-40 170.6 304 44.7
HPP92_023560 Vanilla planifolia HOM05D006174 ORTHO05D007987 1.5e-40 170.6 304 44.4
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.2e-39 166.8 191 57.6
Lj7C346T1 Lonicera japonica HOM05D006174 ORTHO05D007987 6.4e-39 165.2 273 38.1
Ca_25317_v3 Cicer arietinum L. HOM05D006174 ORTHO05D007987 3.0e-36 156.4 316 44.9
Nn7g36521 Nelumbo nucifera HOM05D006174 ORTHO05D007987 8.7e-36 154.8 228 56.6
SGA_v2.0_scaffold154G37185 Striga asiatica HOM05D006174 ORTHO05D007987 8.1e-34 148.3 218 41.7
CAN.G1503.13 Capsicum annuum HOM05D006174 ORTHO05D007987 1.5e-32 144.1 212 42.0
Os03g0736200 Oryza sativa ssp. japonica HOM05D006174 ORTHO05D007987 2.0e-32 143.7 300 44.7
Zm00001eb056380 Zea mays HOM05D006174 ORTHO05D007987 2.2e-31 140.2 300 44.0
Glyma.16G052400 Glycine max HOM05D006174 ORTHO05D007987 6.4e-31 138.7 160 65.0
arahy.Tifrunner.gnm1.ann1.DV4E2P Arachis hypogaea HOM05D006174 ORTHO05D007987 2.3e-28 130.2 237 49.4
COL.COLO4_03953 Corchorus olitorius HOM05D006174 ORTHO05D007987 3.1e-25 119.8 93 62.4
BcaC01g01605 Brassica carinata HOM05D006174 ORTHO05D027324 9.0e-25 118.2 227 50.7
SEGI_34053 Sequoiadendron giganteum HOM05D006174 ORTHO05D007987 2.1e-18 97.1 171 36.8
C03p73930 Brassica napus HOM05D000313 ORTHO05D018464 4.8e-18 95.9 130 43.8
C03p73970 Brassica napus HOM05D006174 ORTHO05D027324 4.8e-18 95.9 130 43.8
C03p74000 Brassica napus HOM05D006174 ORTHO05D027324 6.2e-18 95.5 130 43.8
Haze_17519 Corylus avellana HOM05D006174 ORTHO05D007987 8.1e-18 95.1 250 28.4
BolC3t19678H Brassica oleracea HOM05D006174 ORTHO05D007987 1.2e-16 91.3 144 38.2
C03p74150 Brassica napus HOM05D006174 ORTHO05D007987 9.6e-11 71.6 94 48.9


User provided reference genes

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