Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 0.0e+00 1454.1 732 100.0
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 0.0e+00 1098.6 812 73.3
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-32 146.0 187 43.3
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 4.5e-29 134.0 174 43.1
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.9e-28 131.3 505 26.3
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 3.3e-27 127.9 703 22.5
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.2e-26 125.9 628 26.6
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 1.2e-26 125.9 206 35.9
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.2e-26 125.9 233 34.3
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.0e-25 122.9 263 30.4
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 2.2e-23 115.2 364 29.1
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.9e-23 114.8 152 42.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 6.4e-23 113.6 110 50.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.1e-22 112.8 155 40.6
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 5.4e-22 110.5 584 25.0
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.2e-21 109.4 166 37.3
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 2.7e-21 108.2 309 27.5
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.7e-21 108.2 165 39.4
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 3.5e-21 107.8 164 36.6
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 3.5e-21 107.8 163 38.0
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.5e-21 107.8 206 33.0
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.5e-21 107.8 175 35.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.0e-20 106.3 394 27.4
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.3e-20 105.9 135 39.3
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.7e-20 105.5 172 36.0
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.7e-20 105.5 113 44.2
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.3e-20 105.1 165 37.6
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 3.0e-20 104.8 163 36.8
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 5.0e-20 104.0 621 21.3
Cpa.g.sc1156.1 Carica papaya HOM05D029276 ORTHO05D003486 6.6e-20 103.6 565 23.9
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.1e-19 102.8 165 36.4
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.5e-19 102.4 177 34.5
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.5e-19 101.7 159 37.7
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.5e-19 101.7 159 37.1
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.3e-19 100.9 113 43.4
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.6e-19 100.5 147 38.8
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.2e-18 99.4 168 38.7
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 2.8e-18 98.2 165 33.9
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.6e-18 97.8 321 27.7
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.7e-18 97.4 118 35.6
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 6.2e-18 97.1 113 42.5
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 6.2e-18 97.1 307 25.7
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 8.0e-18 96.7 171 36.3
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.0e-17 96.3 138 39.9
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.0e-17 96.3 165 34.5
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.0e-17 96.3 168 33.9
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.4e-17 95.9 168 31.0
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 1.8e-17 95.5 164 37.2
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.8e-17 95.5 257 30.7
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.3e-17 95.1 308 28.6
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.1e-17 94.7 201 32.8
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 3.1e-17 94.7 107 46.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.0e-17 94.4 158 31.0
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 4.0e-17 94.4 156 30.1
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 5.2e-17 94.0 372 27.2
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.2e-17 94.0 157 35.0
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 6.8e-17 93.6 158 34.8
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 6.8e-17 93.6 112 42.0
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 6.8e-17 93.6 162 37.0
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.2e-16 92.8 114 42.1
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.5e-16 92.4 164 34.8
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.6e-16 91.7 109 38.5
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.4e-16 91.3 167 31.7
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 4.4e-16 90.9 154 33.1
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.4e-16 90.9 149 36.9
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 5.8e-16 90.5 158 31.6
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 7.5e-16 90.1 154 33.8
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 7.5e-16 90.1 159 36.5
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 7.5e-16 90.1 158 31.6
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 9.8e-16 89.7 155 38.1
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 9.8e-16 89.7 108 34.3
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.3e-15 89.4 163 30.1
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.3e-15 89.4 112 42.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.7e-15 89.0 357 26.6
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.7e-15 89.0 111 38.7
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.2e-15 88.6 332 26.2
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.2e-15 88.6 223 29.6
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.2e-15 88.6 166 31.3
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 2.9e-15 88.2 111 38.7
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.9e-15 88.2 113 39.8
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.7e-15 87.8 176 30.7
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 3.7e-15 87.8 511 25.6
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 3.7e-15 87.8 285 27.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 4.9e-15 87.4 99 44.4
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 6.4e-15 87.0 154 33.1
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 6.4e-15 87.0 163 29.4
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.1e-14 86.3 112 38.4
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.1e-14 86.3 112 37.5
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.1e-14 86.3 150 36.0
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.1e-14 86.3 157 36.9
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.1e-14 86.3 242 28.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.1e-14 86.3 519 22.9
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.4e-14 85.9 106 41.5
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.9e-14 85.5 111 41.4
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 2.4e-14 85.1 112 37.5
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.2e-14 84.7 141 36.9
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 4.1e-14 84.3 156 36.5
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 4.1e-14 84.3 156 36.5
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 5.4e-14 84.0 572 24.3
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 9.2e-14 83.2 217 31.3
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.2e-14 83.2 199 32.2
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-13 82.8 164 31.7
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.6e-13 82.4 249 27.3
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 1.6e-13 82.4 90 45.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 2.0e-13 82.0 291 27.5
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.7e-13 81.6 567 22.9
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 2.7e-13 81.6 93 45.2
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.5e-13 81.3 112 38.4
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.5e-13 81.3 231 26.8
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 3.5e-13 81.3 144 36.8
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 4.6e-13 80.9 109 37.6
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 4.6e-13 80.9 117 37.6
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 6.0e-13 80.5 112 38.4
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 6.0e-13 80.5 579 24.7
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 7.8e-13 80.1 237 28.7
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.0e-12 79.7 141 37.6
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.0e-12 79.7 133 38.3
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.3e-12 79.3 384 26.3
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 1.7e-12 79.0 162 29.6
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.7e-12 79.0 112 33.9
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 2.3e-12 78.6 368 26.6
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-12 78.6 584 25.2
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 2.3e-12 78.6 111 38.7
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.6e-12 77.0 587 25.0
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 6.6e-12 77.0 97 39.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.6e-12 77.0 108 32.4
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 6.6e-12 77.0 108 32.4
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 8.6e-12 76.6 241 29.5
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 8.6e-12 76.6 158 30.4
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.1e-11 76.3 144 29.9
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.1e-11 76.3 109 37.6
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.9e-11 75.5 77 46.8
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.5e-11 75.1 158 29.7
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 3.3e-11 74.7 153 33.3
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.3e-11 74.3 147 32.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.3e-11 74.3 364 25.0
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.2e-10 72.8 144 31.9
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.2e-10 72.8 144 31.9
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-10 72.8 156 27.6
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.6e-10 72.4 151 29.8
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 1.6e-10 72.4 97 40.2
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.1e-10 72.0 127 30.7
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 2.1e-10 72.0 157 31.2
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.1e-10 72.0 118 34.7
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.8e-10 71.6 581 24.4
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.8e-10 71.6 159 30.8
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.6e-10 71.2 298 27.2
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 8.1e-10 70.1 123 34.1
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 8.1e-10 70.1 157 26.8
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.1e-09 69.7 123 34.1
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.1e-09 69.7 110 32.7
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.1e-09 69.7 148 29.7
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.3e-09 68.6 105 35.2
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 3.1e-09 68.2 135 34.1
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 3.1e-09 68.2 135 34.1
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 3.1e-09 68.2 136 30.9
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 4.0e-09 67.8 116 31.0
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 8.9e-09 66.6 88 44.3
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 8.9e-09 66.6 91 41.8
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 8.9e-09 66.6 108 31.5
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 1.2e-08 66.2 119 34.5
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 1.2e-08 66.2 53 52.8
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.2e-08 66.2 288 24.7
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 2.0e-08 65.5 107 31.8
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 2.0e-08 65.5 100 37.0
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 2.6e-08 65.1 107 32.7
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.4e-08 64.7 107 32.7
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 5.8e-08 63.9 88 35.2
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.5e-08 63.5 556 24.8
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.5e-08 63.5 412 21.6
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 9.8e-08 63.2 241 27.0
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 9.8e-08 63.2 120 32.5
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.7e-07 62.4 241 27.0
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.7e-07 62.4 241 27.0
DCAR_014364 Daucus carota HOM05D006236 ORTHO05D003486 1.7e-07 62.4 134 30.6
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 4.9e-07 60.8 112 32.1
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.3e-07 60.1 541 21.3
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 8.3e-07 60.1 109 30.3
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 1.1e-06 59.7 169 26.0
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.2e-06 58.2 128 28.1
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 3.2e-06 58.2 133 27.1
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 9.2e-06 56.6 247 29.1


User provided reference genes

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