Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.6e-152 542.7 277 100.0
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 1.2e-86 323.9 277 67.9
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 2.0e-62 243.4 283 55.1
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 1.5e-57 227.3 288 51.7
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 5.7e-57 225.3 283 52.7
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 4.8e-56 222.2 288 51.0
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 6.3e-56 221.9 284 51.8
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.1e-55 221.1 284 51.8
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.1e-55 221.1 284 51.8
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.4e-55 220.7 281 50.9
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 2.4e-55 219.9 271 50.9
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 2.4e-55 219.9 283 50.9
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 4.1e-55 219.2 288 50.0
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.2e-54 217.6 284 49.3
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 1.3e-53 214.2 285 48.8
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.1e-52 211.1 288 47.6
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.1e-52 211.1 290 46.6
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 1.4e-52 210.7 284 47.9
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.9e-52 210.3 293 47.8
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 4.2e-52 209.1 282 49.3
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 1.2e-51 207.6 300 47.0
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.1e-51 206.8 291 46.0
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.7e-51 206.5 287 49.5
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.6e-51 205.7 291 46.0
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.6e-51 205.7 291 46.4
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 6.1e-51 205.3 287 49.1
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 7.9e-51 204.9 278 49.3
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.4e-50 204.1 280 47.5
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.0e-50 203.0 280 47.9
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 3.0e-50 203.0 282 48.6
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 1.1e-49 201.1 281 47.7
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.1e-49 201.1 283 47.0
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.1e-49 201.1 279 47.7
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.5e-49 200.7 279 46.2
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 1.5e-49 200.7 291 46.4
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 2.6e-49 199.9 278 48.9
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 4.3e-49 199.1 277 47.3
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 5.7e-49 198.7 278 47.1
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 2.8e-48 196.4 274 44.9
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 2.8e-48 196.4 226 54.4
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 3.7e-48 196.1 277 45.5
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 4.1e-47 192.6 278 45.3
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 9.1e-47 191.4 290 44.5
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.2e-46 191.0 278 45.0
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 2.6e-46 189.9 280 44.3
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 3.4e-46 189.5 278 46.0
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 4.5e-46 189.1 278 47.1
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 4.5e-46 189.1 280 44.3
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 5.9e-46 188.7 274 45.3
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 7.7e-46 188.3 284 45.8
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 7.7e-46 188.3 280 43.9
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.3e-45 187.6 297 43.1
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.3e-45 187.6 289 42.6
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 5.0e-45 185.7 296 45.3
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 6.5e-45 185.3 277 43.7
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.1e-44 184.5 292 43.2
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 2.5e-44 183.3 284 42.3
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 3.2e-44 183.0 285 41.8
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.2e-44 182.6 291 42.6
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 5.5e-44 182.2 276 43.5
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 9.4e-44 181.4 292 44.2
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 1.2e-43 181.0 286 44.4
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 2.1e-43 180.3 292 44.2
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 3.6e-43 179.5 295 43.7
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 4.7e-43 179.1 281 42.3
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 6.1e-43 178.7 284 42.3
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.4e-42 177.6 248 47.2
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.4e-42 177.6 282 42.6
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 1.1e-41 174.5 288 42.4
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 1.5e-41 174.1 287 39.0
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 9.7e-41 171.4 308 39.9
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 3.7e-40 169.5 303 39.6
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 6.3e-40 168.7 276 40.6
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 8.2e-40 168.3 283 42.8
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.1e-39 167.9 272 41.2
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.1e-39 167.9 272 41.2
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 3.1e-39 166.4 262 43.5
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 9.1e-39 164.9 272 40.4
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 9.1e-39 164.9 254 45.3
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.2e-38 164.5 272 40.1
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 1.2e-38 164.5 276 40.2
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 4.5e-38 162.5 283 42.8
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 5.0e-37 159.1 278 41.0
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.5e-36 156.8 265 41.5
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 2.5e-36 156.8 276 38.8
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 7.2e-36 155.2 272 39.3
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 6.1e-35 152.1 286 42.0
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.0e-34 151.4 277 41.9
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.8e-34 150.6 203 48.8
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 6.7e-34 148.7 283 35.7
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 5.0e-29 132.5 296 37.5
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 6.5e-29 132.1 275 36.0
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.2e-27 127.9 277 35.4
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.2e-27 127.9 184 46.2
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.2e-27 127.9 186 43.5
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 9.1e-23 111.7 194 42.8
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 2.2e-21 107.1 273 33.7
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 3.8e-21 106.3 131 49.6
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.0e-21 105.9 158 47.5
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 1.5e-20 104.4 131 48.9
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.5e-20 102.4 163 44.8
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 7.2e-20 102.1 115 48.7
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 1.4e-15 87.8 97 52.6
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 2.5e-12 77.0 131 38.9
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 9.5e-12 75.1 47 72.3
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 9.5e-12 75.1 48 77.1
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.8e-10 70.9 99 44.4
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 3.4e-09 66.6 155 32.3
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 9.8e-09 65.1 145 33.1
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 6.4e-08 62.4 132 31.8


User provided reference genes

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