Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 7.0e-167 590.5 290 100.0
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 3.2e-111 405.6 251 84.5
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 8.8e-77 291.2 250 63.2
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 3.7e-75 285.8 251 64.5
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 6.3e-75 285.0 242 64.5
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 1.1e-74 284.3 228 65.4
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 1.8e-74 283.5 242 62.4
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 2.4e-74 283.1 242 63.2
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 5.3e-74 282.0 206 68.0
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 9.1e-74 281.2 252 60.3
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.2e-73 280.8 243 63.0
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 1.6e-73 280.4 234 63.2
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 2.0e-73 280.0 253 60.9
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 5.9e-73 278.5 237 63.7
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 5.9e-73 278.5 250 61.2
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 5.9e-73 278.5 235 63.8
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 7.7e-73 278.1 241 63.9
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.0e-72 277.7 243 62.6
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 2.2e-72 276.6 247 62.8
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 2.9e-72 276.2 185 73.5
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 2.9e-72 276.2 241 63.5
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 5.0e-72 275.4 242 61.2
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 6.5e-72 275.0 210 67.1
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 8.5e-72 274.6 254 60.2
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 1.1e-71 274.2 191 70.2
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 1.9e-71 273.5 242 62.0
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 3.2e-71 272.7 187 73.3
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 5.5e-71 271.9 227 61.2
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 5.5e-71 271.9 187 71.1
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 7.2e-71 271.6 245 62.0
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 7.2e-71 271.6 244 60.7
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 7.2e-71 271.6 206 67.0
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 1.2e-70 270.8 246 59.8
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 1.2e-70 270.8 244 61.5
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 1.6e-70 270.4 227 63.0
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 2.1e-70 270.0 279 54.1
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 3.6e-70 269.2 191 69.6
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 3.6e-70 269.2 220 65.5
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 6.1e-70 268.5 191 68.6
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 6.1e-70 268.5 249 58.6
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 8.0e-70 268.1 224 64.7
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 2.3e-69 266.5 252 60.3
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 4.0e-69 265.8 191 70.7
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 8.8e-69 264.6 245 58.4
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 2.6e-68 263.1 192 67.2
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 3.4e-68 262.7 220 64.5
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 4.4e-68 262.3 185 68.6
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 9.8e-68 261.2 205 65.4
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 9.8e-68 261.2 206 67.0
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 1.3e-67 260.8 191 67.5
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 2.2e-67 260.0 252 58.3
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 2.8e-67 259.6 189 67.7
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 1.4e-66 257.3 207 63.3
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 1.4e-66 257.3 226 60.6
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 3.1e-66 256.1 187 67.9
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 3.1e-66 256.1 209 62.7
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 4.1e-66 255.8 191 67.0
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 2.0e-65 253.4 185 67.0
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 2.7e-65 253.1 245 57.1
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 1.0e-64 251.1 184 67.9
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 1.0e-64 251.1 247 57.9
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 1.0e-64 251.1 220 60.0
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 1.3e-64 250.8 218 60.6
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 1.3e-64 250.8 205 62.4
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 1.7e-64 250.4 232 59.9
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 2.2e-64 250.0 217 59.4
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 2.2e-64 250.0 218 60.6
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 2.2e-64 250.0 206 62.6
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 2.9e-64 249.6 182 68.7
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 2.9e-64 249.6 185 67.0
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 3.8e-64 249.2 188 68.6
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 3.8e-64 249.2 240 56.7
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 3.8e-64 249.2 191 65.4
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 5.0e-64 248.8 225 60.4
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 1.1e-63 247.7 185 64.3
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 2.5e-63 246.5 240 57.1
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 1.2e-62 244.2 242 56.2
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 4.7e-62 242.3 246 54.1
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 1.0e-61 241.1 183 65.6
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 8.8e-61 238.0 190 61.1
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.2e-60 237.7 253 54.2
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.5e-60 237.3 239 56.5
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 4.4e-60 235.7 191 61.8
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 5.7e-60 235.3 183 65.0
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 2.2e-59 233.4 255 52.5
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 1.3e-56 224.2 202 58.4
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 2.9e-56 223.0 184 60.3
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.6e-54 217.2 171 66.1
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 2.3e-53 213.4 258 45.3
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 3.0e-53 213.0 181 58.6
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 3.0e-53 213.0 218 53.2
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 8.9e-53 211.5 184 60.9
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 1.2e-52 211.1 210 51.9
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 1.8e-50 203.8 165 57.0
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 7.0e-50 201.8 188 58.0
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 7.8e-49 198.4 167 62.3
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 1.9e-47 193.7 157 60.5
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 2.3e-45 186.8 111 76.6
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 9.8e-44 181.4 94 86.2
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 3.7e-43 179.5 184 54.9
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 8.9e-37 158.3 145 55.9
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 8.6e-32 141.7 208 41.8
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 1.5e-31 141.0 155 48.4
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 1.5e-28 131.0 200 42.5
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 3.4e-28 129.8 112 54.5
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 9.9e-28 128.3 153 48.4
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 9.2e-26 121.7 116 54.3
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 4.4e-20 102.8 102 50.0
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 4.9e-19 99.4 106 49.1
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 1.6e-14 84.3 63 68.3
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 2.7e-09 67.0 45 64.4


User provided reference genes

Program Settings