Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0055500 Salix brachista HOM05D002745 ORTHO05D002945 8.3e-143 510.4 260 100.0
Potri.002G070800 Populus trichocarpa HOM05D002745 ORTHO05D002945 5.6e-83 311.6 242 71.9
Sabra05G0144200 Salix brachista HOM05D002745 ORTHO05D002945 1.3e-42 177.6 218 51.8
Thecc.08G146300 Theobroma cacao HOM05D002745 ORTHO05D002945 1.0e-28 131.3 248 36.3
Haze_17723 Corylus avellana HOM05D002745 ORTHO05D002945 2.9e-23 113.2 256 36.3
Cfa018348 Carpinus fangiana HOM05D002745 ORTHO05D002945 3.8e-23 112.8 260 36.2
FAN20G0622 Fragaria x ananassa HOM05D002745 ORTHO05D002945 1.5e-22 110.9 149 40.3
Prupe.8G022100 Prunus persica HOM05D002745 ORTHO05D002945 3.3e-22 109.8 144 42.4
Aa31LG4G7010 Aethionema arabicum HOM05D002745 ORTHO05D002945 7.3e-22 108.6 150 43.3
FAN15G2191 Fragaria x ananassa HOM05D002745 ORTHO05D002945 7.3e-22 108.6 149 40.9
FvH4_2g14400 Fragaria vesca HOM05D002745 ORTHO05D002945 3.6e-21 106.3 247 30.0
THA.LOC104813701 Tarenaya hassleriana HOM05D002745 ORTHO05D002945 1.0e-20 104.8 167 40.7
Nitab4.5_0005586g0050 Nicotiana tabacum HOM05D002745 ORTHO05D002945 3.0e-20 103.2 154 34.4
FAN24G0836 Fragaria x ananassa HOM05D002745 ORTHO05D002945 5.2e-20 102.4 245 29.0
TPR.G18781 Trifolium pratense HOM05D002745 ORTHO05D002945 1.5e-19 100.9 165 33.9
RcHm_v2.0_Chr6g0276731 Rosa chinensis HOM05D002745 ORTHO05D002945 2.6e-19 100.1 247 32.8
AUR62019734 Chenopodium quinoa HOM05D002745 ORTHO05D002945 1.3e-18 97.8 145 35.2
CANSAT21G1564 Cannabis sativa HOM05D002745 ORTHO05D002945 2.9e-18 96.7 149 35.6
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 2.9e-18 96.7 146 34.9
THA.LOC104817848 Tarenaya hassleriana HOM05D002745 ORTHO05D002945 6.4e-18 95.5 165 31.5
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 8.3e-18 95.1 181 30.9
HanXRQChr13g0396511 Helianthus annuus HOM05D002745 ORTHO05D002945 1.1e-17 94.7 192 30.2
PGR042G0864 Punica granatum HOM05D002745 ORTHO05D002945 1.4e-17 94.4 145 35.2
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 1.4e-17 94.4 173 32.9
Duzib093G1208 Durio zibethinus HOM05D002745 ORTHO05D002945 2.4e-17 93.6 249 33.7
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 3.2e-17 93.2 225 31.1
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 4.1e-17 92.8 167 34.1
Phvul.002G159200 Phaseolus vulgaris HOM05D002745 ORTHO05D002945 5.4e-17 92.4 179 32.4
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 7.0e-17 92.0 165 32.7
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 9.2e-17 91.7 238 30.7
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 9.2e-17 91.7 225 31.1
Eucgr.E00649 Eucalyptus grandis HOM05D002745 ORTHO05D002945 1.2e-16 91.3 156 35.3
Sc22g0005360 Simmondsia chinensis HOM05D002745 ORTHO05D002945 1.2e-16 91.3 168 35.1
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 2.0e-16 90.5 238 30.3
CiPaw.15G020400 Carya illinoinensis HOM05D002745 ORTHO05D002945 2.0e-16 90.5 202 34.7
Cc08_g15110 Coffea canephora HOM05D002745 ORTHO05D002945 2.7e-16 90.1 156 34.6
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 2.7e-16 90.1 225 30.7
Lalb_Chr08g0240711 Lupinus albus HOM05D002745 ORTHO05D002945 2.7e-16 90.1 233 30.5
Ah.07g196580 Amaranthus hybridus HOM05D002745 ORTHO05D002945 3.5e-16 89.7 144 35.4
Lalb_Chr09g0320851 Lupinus albus HOM05D002745 ORTHO05D002945 3.5e-16 89.7 145 33.8
Phvul.009G136300 Phaseolus vulgaris HOM05D002745 ORTHO05D002945 3.5e-16 89.7 189 31.7
Cc03_g15810 Coffea canephora HOM05D002745 ORTHO05D002945 4.6e-16 89.4 174 32.2
FAN08G3121 Fragaria x ananassa HOM05D002745 ORTHO05D002945 4.6e-16 89.4 193 33.2
TPR.G6622 Trifolium pratense HOM05D002745 ORTHO05D002945 6.0e-16 89.0 141 33.3
PSO832G1614 Papaver somniferum HOM05D002745 ORTHO05D002945 7.8e-16 88.6 172 30.2
Medtr3g090440 Medicago truncatula HOM05D002745 ORTHO05D002945 1.3e-15 87.8 235 30.2
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 1.3e-15 87.8 143 32.9
Psat3g022440 Pisum sativum HOM05D002745 ORTHO05D002945 1.3e-15 87.8 140 35.7
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 1.7e-15 87.4 172 32.6
EL10Ac5g12821 Beta vulgaris HOM05D002745 ORTHO05D002945 1.7e-15 87.4 142 30.3
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 1.7e-15 87.4 139 32.4
Eucgr.E00647 Eucalyptus grandis HOM05D002745 ORTHO05D002945 2.3e-15 87.0 156 32.1
Glyma.01G221700 Glycine max HOM05D002745 ORTHO05D002945 2.3e-15 87.0 139 34.5
PSO063G0080 Papaver somniferum HOM05D002745 ORTHO05D002945 2.3e-15 87.0 154 35.1
Gorai.005G081100 Gossypium raimondii HOM05D002745 ORTHO05D002945 3.0e-15 86.7 120 42.5
QL02p024910 Quercus lobata HOM05D002745 ORTHO05D002945 3.0e-15 86.7 204 33.3
AUR62010728 Chenopodium quinoa HOM05D002745 ORTHO05D002945 3.9e-15 86.3 108 36.1
Solyc12g056190.2 Solanum lycopersicum HOM05D002745 ORTHO05D002945 6.6e-15 85.5 137 32.1
Sopen12g028700 Solanum pennellii HOM05D002745 ORTHO05D002945 6.6e-15 85.5 137 32.1
arahy.Tifrunner.gnm1.ann1.TL04YN Arachis hypogaea HOM05D002745 ORTHO05D002945 8.6e-15 85.1 149 34.9
FvH4_5g03000 Fragaria vesca HOM05D002745 ORTHO05D002945 8.6e-15 85.1 193 32.1
VMungo1309G0217 Vigna mungo HOM05D002745 ORTHO05D002945 1.1e-14 84.7 196 30.1
Nn1g01627 Nelumbo nucifera HOM05D002745 ORTHO05D002945 1.9e-14 84.0 163 30.7
ECA233G2193 Erigeron canadensis HOM05D002745 ORTHO05D002945 2.5e-14 83.6 130 33.1
CiPaw.11G131300 Carya illinoinensis HOM05D002745 ORTHO05D002945 3.3e-14 83.2 149 34.2
Nitab4.5_0000947g0080 Nicotiana tabacum HOM05D002745 ORTHO05D002945 3.3e-14 83.2 146 33.6
Sabra03G0093800 Salix brachista HOM05D002745 ORTHO05D002945 3.3e-14 83.2 143 32.2
arahy.Tifrunner.gnm1.ann1.IX2F7U Arachis hypogaea HOM05D002745 ORTHO05D002945 5.6e-14 82.4 149 32.9
Gohir.A02G066001 Gossypium hirsutum HOM05D002745 ORTHO05D002945 5.6e-14 82.4 145 35.2
Manes.01G058300 Manihot esculenta HOM05D002745 ORTHO05D002945 1.6e-13 80.9 159 29.6
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 2.1e-13 80.5 138 30.4
Potri.003G131500 Populus trichocarpa HOM05D002745 ORTHO05D002945 2.1e-13 80.5 146 30.8
Psat2g182960 Pisum sativum HOM05D002745 ORTHO05D002945 4.7e-13 79.3 127 32.3
RcHm_v2.0_Chr7g0196861 Rosa chinensis HOM05D002745 ORTHO05D002945 6.2e-13 79.0 116 37.1
Sabra01G0075300 Salix brachista HOM05D002745 ORTHO05D002945 6.2e-13 79.0 160 28.8
FAN13G2577 Fragaria x ananassa HOM05D002745 ORTHO05D002945 8.0e-13 78.6 108 38.0
Oeu049859.2 Olea europaea HOM05D002745 ORTHO05D002945 1.1e-12 78.2 136 29.4
VMungo1215G3300 Vigna mungo HOM05D002745 ORTHO05D002945 1.1e-12 78.2 105 33.3
ECA232G4303 Erigeron canadensis HOM05D000972 ORTHO05D007902 1.4e-12 77.8 151 30.5
Sopen08g029780 Solanum pennellii HOM05D002745 ORTHO05D002945 1.8e-12 77.4 155 29.0
Prupe.5G104900 Prunus persica HOM05D002745 ORTHO05D002945 2.3e-12 77.0 141 31.2
Oeu031426.3 Olea europaea HOM05D002745 ORTHO05D002945 3.1e-12 76.6 136 31.6
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 4.0e-12 76.3 183 30.6
Nitab4.5_0000769g0180 Nicotiana tabacum HOM05D002745 ORTHO05D002945 6.8e-12 75.5 120 32.5
Potri.001G100500 Populus trichocarpa HOM05D002745 ORTHO05D002945 6.8e-12 75.5 143 30.1
Nitab4.5_0002282g0070 Nicotiana tabacum HOM05D002745 ORTHO05D002945 1.2e-11 74.7 151 31.1
MD06G1089000 Malus domestica HOM05D002745 ORTHO05D002945 2.0e-11 73.9 112 33.0
HPP92_028537 Vanilla planifolia HOM05D002745 ORTHO05D002945 2.0e-11 73.9 143 32.2
Lsat_1_v5_gn_4_133100 Lactuca sativa HOM05D002745 ORTHO05D002945 2.6e-11 73.6 98 32.7
CsaV3_5G002540 Cucumis sativus L. HOM05D002745 ORTHO05D002945 3.4e-11 73.2 150 31.3
Sopen08g029770 Solanum pennellii HOM05D002745 ORTHO05D002945 3.4e-11 73.2 160 27.5
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 4.4e-11 72.8 205 30.2
Peaxi162Scf00078g00352 Petunia axillaris HOM05D002745 ORTHO05D002945 4.4e-11 72.8 199 25.1
Gohir.D02G071900 Gossypium hirsutum HOM05D002745 ORTHO05D002945 7.5e-11 72.0 87 42.5
Nitab4.5_0006500g0010 Nicotiana tabacum HOM05D002745 ORTHO05D002945 1.7e-10 70.9 114 28.9
SEGI_04580 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 2.2e-10 70.5 137 29.2
CDE11G0610 Ceratophyllum demersum HOM05D002745 ORTHO05D002945 3.7e-10 69.7 105 31.4
LjContig00312_ERROPOS870357g0020900 Lotus japonicus HOM05D002745 ORTHO05D002945 3.7e-10 69.7 108 29.6
Solyc08g081450.4 Solanum lycopersicum HOM05D002745 ORTHO05D002945 6.4e-10 68.9 160 26.9
ClCG01G002430 Citrullus lanatus HOM05D002745 ORTHO05D002945 8.3e-10 68.6 153 28.8
PGSC0003DMG400012326 Solanum tuberosum HOM05D002745 ORTHO05D002945 1.4e-09 67.8 121 29.8
Sed0004172 Sechium edule HOM05D002745 ORTHO05D002945 1.9e-09 67.4 225 28.4
Actinidia27369 Actinidia chinensis HOM05D002745 ORTHO05D002945 2.4e-09 67.0 214 27.6
ATR0661G383 Amborella trichopoda HOM05D002745 ORTHO05D002945 2.4e-09 67.0 140 29.3
Zm00001eb065330 Zea mays HOM05D002745 ORTHO05D002945 3.2e-09 66.6 158 29.7
arahy.Tifrunner.gnm1.ann1.A85HWF Arachis hypogaea HOM05D002745 ORTHO05D002945 4.1e-09 66.2 140 27.1
arahy.Tifrunner.gnm1.ann1.WZK5NF Arachis hypogaea HOM05D002745 ORTHO05D002945 4.1e-09 66.2 124 28.2
CAN.G532.18 Capsicum annuum HOM05D002745 ORTHO05D002945 4.1e-09 66.2 108 31.5
MELO3C005702.2 Cucumis melo HOM05D002745 ORTHO05D002945 4.1e-09 66.2 119 30.3
Mapoly0125s0025 Marchantia polymorpha HOM05D002745 ORTHO05D002945 4.1e-09 66.2 141 29.1
Thecc.07G155300 Theobroma cacao HOM05D002745 ORTHO05D002945 4.1e-09 66.2 145 26.9
arahy.Tifrunner.gnm1.ann1.4VP9UF Arachis hypogaea HOM05D002745 ORTHO05D002945 5.4e-09 65.9 189 25.4
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 7.0e-09 65.5 117 30.8
GSVIVG01036391001 Vitis vinifera HOM05D002745 ORTHO05D002945 7.0e-09 65.5 98 28.6
arahy.Tifrunner.gnm1.ann1.DD74S9 Arachis hypogaea HOM05D002745 ORTHO05D002945 1.2e-08 64.7 110 30.9
COL.COLO4_03661 Corchorus olitorius HOM05D002745 ORTHO05D002945 1.2e-08 64.7 101 37.6
Potri.013G100600 Populus trichocarpa HOM05D002745 ORTHO05D002945 3.5e-08 63.2 103 27.2
SMO200G0065 Selaginella moellendorffii HOM05D002745 ORTHO05D002945 4.6e-08 62.8 142 26.8
BcaC08g44532 Brassica carinata HOM05D002745 ORTHO05D002945 1.3e-07 61.2 142 29.6
C06p19920 Brassica napus HOM05D002745 ORTHO05D002945 1.3e-07 61.2 142 29.6
BolC6t37179H Brassica oleracea HOM05D002745 ORTHO05D002945 1.3e-07 61.2 142 29.6
BraA07t29769Z Brassica rapa HOM05D002745 ORTHO05D002945 1.3e-07 61.2 142 29.6
BcaB02g07891 Brassica carinata HOM05D002745 ORTHO05D002945 8.6e-07 58.5 142 28.9
A07p20770 Brassica napus HOM05D002745 ORTHO05D002945 1.5e-06 57.8 142 28.9
FAN04G0315 Fragaria x ananassa HOM05D002745 ORTHO05D002945 1.5e-06 57.8 192 28.1
Thhalv10028091m.g Eutrema salsugineum HOM05D002745 ORTHO05D002945 3.3e-06 56.6 213 24.9
FAN18G2249 Fragaria x ananassa HOM05D002745 ORTHO05D002945 4.3e-06 56.2 192 26.0


User provided reference genes

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